Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g1046 ATGGCTTTCAGAAAGGGTTACAGCGACGGTGCCAGTCCCGGCAAAATCTTCATAGGAGGGTTATCCAAAGACACCACCATGGATACGTTCGTGAAGTACTTTGAGAAGTTCGGAGAGATAACGGACTCAGTGATAATGAAGGATCGTCAATCGGGTCGACCCAGAGGTTTCGGGTTCATCACATATGCGGATCCTTCAGTTGTTGACCAAGTCATTCAGGAGGACCATGTCATCAATGATAAACAGGTGGAGATCAAGAGGACTATTCCAAAGGGTTCATCTCAAGCTAATGACTTCAAATCAAAGAAGATTTTTGTTGGTGGTATTCCAACAGCAGTATCTGAAGATGAACTCAAGGATTTCTTCTCCAAGTATGGGAAGGTTGTGGAGCATGAAATAATACGTGACCACACTACAAAACGCTCCCGGGGTTTTGGATTTATAGTTTTTGACAATGATAAGGTTGTTGATAACATCTTGTCAGATGGGAATCTGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTCGTCCATTTGCTAGTCACTCTAGGGCACGTTCGTATAATGATGGTTTCGGTGGATTTGGCGATTCTTATGGAATTTTTTCTAGTAGCAGTTATGGCCCTGGTTCCTATAGGTCTCCTGGAGGTTTTGGTGCTAGATATGGTGATTATGGTGGGTATGGTGGTGGTGATGACTTCAGTGGTGGTTTTGGGGGTTATGGTGCTGCTGCTGGTGGATATGTAGGTTACCCAGCAGACTCGTCATTTGGTTACTCTAGTCGCTATGGTTCCTACATGGGGGCCCTTGGTGGTGGATATGGTAGTGGTGCGTTAGGTGCTTATGGACGAGGTGCTGGGGGTTATGGAAGCTATGGTAGTCCTGGCACTGGTGGGGGTTATGAGTCAGGCCCTGGTGCTGGTTATGGTGGGGCTGGAGGACTGTATCCTAGTAGGGGAAGTTATGGTGGTAGTAGTCGTTATCATCCTTATGCAAGATAG 1041 0.4621 MAFRKGYSDGASPGKIFIGGLSKDTTMDTFVKYFEKFGEITDSVIMKDRQSGRPRGFGFITYADPSVVDQVIQEDHVINDKQVEIKRTIPKGSSQANDFKSKKIFVGGIPTAVSEDELKDFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNDKVVDNILSDGNLIDMAGTQVEIKKAEPKKSSNPASLRPFASHSRARSYNDGFGGFGDSYGIFSSSSYGPGSYRSPGGFGARYGDYGGYGGGDDFSGGFGGYGAAAGGYVGYPADSSFGYSSRYGSYMGALGGGYGSGALGAYGRGAGGYGSYGSPGTGGGYESGPGAGYGGAGGLYPSRGSYGGSSRYHPYAR* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g1046 346 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 346 - -
Lan11g1046 346 Gene3D - 93 213 IPR012677 -
Lan11g1046 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Lan11g1046 346 SUPERFAMILY RNA-binding domain, RBD 12 94 IPR035979 GO:0003676
Lan11g1046 346 SMART rrm1_1 103 176 IPR000504 GO:0003723
Lan11g1046 346 SMART rrm1_1 15 86 IPR000504 GO:0003723
Lan11g1046 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Lan11g1046 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 73 IPR000504 GO:0003723
Lan11g1046 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 161 IPR000504 GO:0003723
Lan11g1046 346 PANTHER OS08G0320100 PROTEIN 1 346 - -
Lan11g1046 346 Gene3D - 14 92 IPR012677 -
Lan11g1046 346 SUPERFAMILY RNA-binding domain, RBD 95 209 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g1046 Lan-Chr11 12145019 12147976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g1046 4 152 Eukaryotic Initiation Factors Gene Family AT1G71770 26.946 5.91e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g1046 K12741 - gmx:100801373 378.252