Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0993 ATGGCCAAGAAGCGAAAGCTCCGATCCTCAGACTCCGAAGCTACCAAGCAATCCGAAATTGAATCCCCTATTGAACAGGAACAACAAACCCTAGAAGGAGAGGGTGTCGAACAAGAACAACAATCCATGGAAGAATACCAACACAACAACATGCCCATCGATCAACAACCACCAAACATCGAAGAAGAAGACGAAGAAGATGAAGATGAAACCCTAGAAGACCAGAATCAGGAGCAGGATTCTCAACCTTCCAACGACGCATCTGCATTGGTTAAGGTTGAAGTAAACGGTGATGTCAACAACAACGAAGAGGAAGAGGAAGACCTCGAATTGGAAGATGAACCTGTGGAGAAGCTTCTAGAACCTTTCACCAAGGAGCAGCTTCACTCTCTTGTCAAGCAAGCACTCGAGAAGTTCCCTGATTTCGTCGAAAATGTTCGCCATCTGGCTGATGTGGACCCCTCTCACCGCAAAATCTTCATACATGGCCTTGGCTGGGATGCAACAGCGGAAACCCTGACATCTGTCTTCTCGAAGTACGGCGAGATCGAAGACTGCAAGGCCGTCACTGATAAGCTCTCTGGGAAATCCAAGGGCTATGCTTTTATCCTTTTCAAGCATCGTAGTGGGGCACGCAAGGCTCTGAAGCAGCCACAGAAGACAATTGGTAACCGAACCACATCGTGCCAATTGGCCTCTGCTGGACCTGTTCCTGCACCACCTCCTGTGGCTCCTGCGGTTTCCGAGTATACTCAAAGGAAGATTTTTGTGAGCAATGTGAGTGCTGACATTGATCCCCAGAAGCTGCTTGAGTTCTTCAGGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTTGATAAGCTGACGGGGAAGCCCAAAGGGTTTGCGCTTTTCGTGTATAAATCGGTGGATAGTGCAAAGAAGGCTCTGGAAGATCCCCAAAAGCAGTTTGAAGGGCATGTTTTGTATTGCCAGAAAGCTGTCGATGGCCCTAAGGGGAAACAAGGGTATCATCAGCAACCACATCACCAACAGCACCAGCATCATTCCCACCATCATCACCAGCCCCACTATCAAAGGAAGGAGAGGAACAAGCATACTTCTGGTGGGCCTGCACATGGTGGTGGGCACTTGATGGCACCATCAGGTCCTCCTGTTGGATACAATCCCGGAGTTTCGAGGGCTCAAGGGTTGAATCCTGTGCTTGGTCAGGCGATATCAGCTTTGCTTACGACCCAAGGAGCTGGGTTTGGACTTGGGAACTTTCTTGGGGGTCTTGGTGGTGCACCTGTGAATCCGTCTGTTCCACCTGCTGGGTATGGTAATCAGCCTGCTATGAACTATGGGAATCAGCAGGGGATGCAGCAGGGATACCAGAATCCTCAAATGGGGCAGAGCAGCGGTGTTAGGCCTCACCCTGGTGCTGGCGCCCCTTACATGGGTCATTAG 1452 0.5041 MAKKRKLRSSDSEATKQSEIESPIEQEQQTLEGEGVEQEQQSMEEYQHNNMPIDQQPPNIEEEDEEDEDETLEDQNQEQDSQPSNDASALVKVEVNGDVNNNEEEEEDLELEDEPVEKLLEPFTKEQLHSLVKQALEKFPDFVENVRHLADVDPSHRKIFIHGLGWDATAETLTSVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGARKALKQPQKTIGNRTTSCQLASAGPVPAPPPVAPAVSEYTQRKIFVSNVSADIDPQKLLEFFRQFGEVEDGPLGLDKLTGKPKGFALFVYKSVDSAKKALEDPQKQFEGHVLYCQKAVDGPKGKQGYHQQPHHQQHQHHSHHHHQPHYQRKERNKHTSGGPAHGGGHLMAPSGPPVGYNPGVSRAQGLNPVLGQAISALLTTQGAGFGLGNFLGGLGGAPVNPSVPPAGYGNQPAMNYGNQQGMQQGYQNPQMGQSSGVRPHPGAGAPYMGH* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0993 483 SUPERFAMILY RNA-binding domain, RBD 237 349 IPR035979 GO:0003676
Lan11g0993 483 MobiDBLite consensus disorder prediction 1 20 - -
Lan11g0993 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Lan11g0993 483 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 470 - -
Lan11g0993 483 Coils Coil 92 112 - -
Lan11g0993 483 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 470 - -
Lan11g0993 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 226 IPR000504 GO:0003723
Lan11g0993 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 323 IPR000504 GO:0003723
Lan11g0993 483 MobiDBLite consensus disorder prediction 58 76 - -
Lan11g0993 483 MobiDBLite consensus disorder prediction 340 362 - -
Lan11g0993 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 336 IPR000504 GO:0003723
Lan11g0993 483 Gene3D - 244 377 IPR012677 -
Lan11g0993 483 SUPERFAMILY RNA-binding domain, RBD 148 233 IPR035979 GO:0003676
Lan11g0993 483 MobiDBLite consensus disorder prediction 329 393 - -
Lan11g0993 483 MobiDBLite consensus disorder prediction 21 56 - -
Lan11g0993 483 Coils Coil 62 82 - -
Lan11g0993 483 CDD RRM_RBM24_RBM38_like 253 328 - -
Lan11g0993 483 MobiDBLite consensus disorder prediction 1 91 - -
Lan11g0993 483 Gene3D - 53 239 IPR012677 -
Lan11g0993 483 MobiDBLite consensus disorder prediction 455 483 - -
Lan11g0993 483 CDD RRM_RBM24_RBM38_like 157 232 - -
Lan11g0993 483 SMART rrm1_1 158 230 IPR000504 GO:0003723
Lan11g0993 483 SMART rrm1_1 254 326 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0993 Lan-Chr11 10851363 10856209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0993 232 340 C2H2 Transcription Factor Family AT2G19380 30.275 2.24e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0993 K12741 - gmx:100792637 578.17