Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0963 ATGGTGGATATTAGCGACGAATTTTCAGGAACAATTTGTTCCATTTGCTACGAATCTCTCAACCCAATTAACGAAGACCTTCAATCTATCTCTATCTGCGGCCATGTCTTTCATGAACTCTGTTTGCAGCAATGGTTTGAGTATTCGAAAGCGAAAAAGCACACTTGCCCTGTTTGTAAACAGGGTTGCAAGGTTGATGATGCGTGCCGGCTTTACTTTCAATCGATCGGAGAAGGTGAAGCTGTTCTTTCAGCTCAGAAACCCTTTGATTTTCAGGAAGATGCTGGGGTTTTGCGCAAAGAAGTTAAGTTGTTGGAGGTTAAAGTTTCAGGGCTTAGTTCTCAATTAAATCGTCAAGGAAAGGAATTAGAAGAAGTAACAGAGGAGCTTTGTGCTTGCAAGAACCAGGCAAAGATTGATATAGCATTGAAAAATCAGGCCTTGAATGAAAAAACATCCCTACAATTTCAGCTTCGTATGAAATCAGAGGAACTTGAGAAGTCAAGCTTTGAGCGTTTTAGATTAGAAGAAAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGCTTCTGATCTGGACCTTGATGAAGAGGATGTTCTGAGGCTTGCCACTTTGGGTAATGGGGCCAACAATAAAGATACAATCGATACATTAAAGAAATCTCTGGTCTTGCGGAACAAGAGTTACAAAGAATTGATGGCCAAGTGCAATCTTCTGGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCTAAAGAGAAGATCGCTAAACTGAAGGCAAAGGTACAAGAACTGGAGACAGCTGCTGAAGTGAAAGAGAATGAATATCTGATGTCTCATAAACATAAAGCATCAAAGAAAGCAAAGTCTTCAAAGACTCTTGAAAACAGTGTCAATTCTAATCCTGATGTATTGGCAGCTAGTGAATATTCATCAAAAGAGCAAATGAATATAGAGAACTCAGATGCTGCTAAAAATAAAGCTGCGAATTTTGGTAACGGAAGTGAAACTACTTTGTCTGTTGATAAAGAGAGAGAAGTCATCTCAATTGACGATGATTCAGCATTTACAAAACCTTTGCCTGAGCACCCAAAACTCGATTGCAAAGATCAAGACATGGACGATGTTGCTCTTAGAAAAGCTACTCAAGCGAAGCCAGAGGCAGCAATGCAAGGAAAATGCAATCTGGCTGAATCTTCAAGAATTGATATTGACATTGAAATTCCCAACACTTCATCTGGTGTCATGGATGAAGACGTGACATTACTATATAATGTTAAACAAGCTGAGCCAATGATTAACATTAGAAAAGAGTCACCATTAACACTTTCAAGTCCAGGGGACATCTGCTTTACTGGTGGATTGCTTGGTCCTGATGGAACTCAACGATACTTGGGTAAATGGTGCAAGCGTGGACAAAATAGTGAACCGGTTTCTGCAAAAAGTTCAGGTAATGGGGATTTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAACTAAAGCTCTAAGGTGTTCAAACCAAACCTTCTCGGATGGTAAGGAAAACTCATTAAGTTCAAAAAGGTTGAAGTTGAGATCTAAAACAAATAGTTTGCAATCCAAGGGGTGCTTGCAGATAGAACACTTCTTTGGGAGAGCCACTCAGTAA 1665 0.4006 MVDISDEFSGTICSICYESLNPINEDLQSISICGHVFHELCLQQWFEYSKAKKHTCPVCKQGCKVDDACRLYFQSIGEGEAVLSAQKPFDFQEDAGVLRKEVKLLEVKVSGLSSQLNRQGKELEEVTEELCACKNQAKIDIALKNQALNEKTSLQFQLRMKSEELEKSSFERFRLEERNMALAKELAALKLASDLDLDEEDVLRLATLGNGANNKDTIDTLKKSLVLRNKSYKELMAKCNLLGRGEARYSKKLEKAKEKIAKLKAKVQELETAAEVKENEYLMSHKHKASKKAKSSKTLENSVNSNPDVLAASEYSSKEQMNIENSDAAKNKAANFGNGSETTLSVDKEREVISIDDDSAFTKPLPEHPKLDCKDQDMDDVALRKATQAKPEAAMQGKCNLAESSRIDIDIEIPNTSSGVMDEDVTLLYNVKQAEPMINIRKESPLTLSSPGDICFTGGLLGPDGTQRYLGKWCKRGQNSEPVSAKSSGNGDLIAVGADGRGGRTKALRCSNQTFSDGKENSLSSKRLKLRSKTNSLQSKGCLQIEHFFGRATQ* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0963 554 SMART ringv_2 12 60 IPR011016 GO:0008270
Lan11g0963 554 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
Lan11g0963 554 Coils Coil 246 280 - -
Lan11g0963 554 MobiDBLite consensus disorder prediction 285 304 - -
Lan11g0963 554 SUPERFAMILY RING/U-box 8 65 - -
Lan11g0963 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 173 IPR013083 -
Lan11g0963 554 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 553 - -
Lan11g0963 554 CDD RING-H2 13 60 - -
Lan11g0963 554 Coils Coil 109 129 - -
Lan11g0963 554 SMART ring_2 13 59 IPR001841 -
Lan11g0963 554 Pfam Ring finger domain 12 60 IPR001841 -
Lan11g0963 554 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0963 Lan-Chr11 10033518 10037899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0963 12 554 C3H Transcription Factor Family AT4G01270 40.942 9.53e-114 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0963 K11985 - gmx:100812811 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0963 11 10033518 10037899 Lan11g0963 11 10033518 10037899 ECH
Lan11g0963 11 10033518 10037899 Lan9g0730 9 11551214 11555878 LSH