Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0949 ATGGGAGGTTGCTGTTGTTCCGCCAGAAAACCTCACCTGCCGGGAACACCAGTGTATTACTATTACCCACCGTCTTTGGCAGAGCGCGAGTCATTGAACACTACTGATGGTTCGTCTGCTTCACTCACGGCTGGATTGCTGGTAGGCTTGGACCTAGAATCATCCACACCCGATACATATCAGTCCCCTCCTGCACCTCTGCCGTATGATACAGTCCTAGGAGTTCCAGCATCAACATACTCTGAAGCAGGCAGAGAAACACCTAGCGGTACTAGTTTTGAAACTTCAGTTAGATGTGAGGATCTCATTGAATCGGAATGCAAAGCTCAAGCTGATTCCGAACCCATGTCTCCAAAGAAACCAGAACTGTCAAAATCAAATGAATCTCATGCATTAGCGACAGAAGAAGAGGATGTCTGTCCAATCTGCCTTGAAGAATATGATGTCGAGAATCCTAAAAATCTGACAAACTGTGATCATCAGTTTCACCTCTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCGATATGTGATCAGGATATGATATTTGACGAAATGACACTGAACTAG 579 0.4542 MGGCCCSARKPHLPGTPVYYYYPPSLAERESLNTTDGSSASLTAGLLVGLDLESSTPDTYQSPPAPLPYDTVLGVPASTYSEAGRETPSGTSFETSVRCEDLIESECKAQADSEPMSPKKPELSKSNESHALATEEEDVCPICLEEYDVENPKNLTNCDHQFHLSCILEWMERSDSCPICDQDMIFDEMTLN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0949 192 SMART ring_2 140 180 IPR001841 -
Lan11g0949 192 SUPERFAMILY RING/U-box 134 187 - -
Lan11g0949 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Lan11g0949 192 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 188 - -
Lan11g0949 192 Pfam Ring finger domain 139 180 IPR001841 -
Lan11g0949 192 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lan11g0949 192 MobiDBLite consensus disorder prediction 108 131 - -
Lan11g0949 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0949 Lan-Chr11 9718835 9725395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0949 1 188 C3H Transcription Factor Family AT4G00335 55.851 8.20e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0949 - - adu:107472508 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0949 11 9718835 9725395 Lan1g0756 1 17639953 17645385 LSH
Lan11g0949 11 9718835 9725395 Lan1g2027 1 35418744 35422770 LSH