LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g0932	ATGAACAACAGTAACAACAACAGAGCGAGATATCCGCCCGGTATCGGGTACGGACGCGGTGGTGGTGGTGGTGGTGACGGAGGAGGGTTCAACCCTAATCATAACCAAAACGCACCGTTTCAACCAAGGCCCTCTTATCAACAACAACAACAACAGCACCAGCATCAGCAACACTATGCGCAGAGGAATTTGGTTCCGCAACAACAGCAGCAGCAGCAACAATGGTTGAGAAGGGCGCAATTGGGTGCTGGCGGTTCTGAATCGAACGTTGTTGACGAGGTCGAAAAGACTGTCCAGACTGAAGCCAGTGATTCAAGTTCACAAGATTGGAAGGCAAGACTAAAGGCTCCACCACCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGAGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGTATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAATGGAACAGGCAAAACAGCCGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATACTAATGTTATTCAAGCTGTTATACTGGTCCCTACTCGAGAGTTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGGAAGCATTTGAAAATTGAAGTTATGGTCACAACAGGTGGTACCAGCTTGAGAGATGATATTATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTCACTAAGAAGGGTGTTTGTGTTCTGAAAGATTGCACTATGCTTGTTATGGATGAGGCTGATAAACTTTTGTCCCCGGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTAATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGAGGCAGAAAGTCCATTGCCTGAATACACTATTTTCTAAGTTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACAGAACTTGGTTATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGATCATCGTAATAGAGTATTTCATGACTTCCGTAATGGTGCATGCAGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAATTTCGACTTTCCCAAGAACTCGGAAACTTATTTGCACAGGGTTGGCCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACCTGATCACTTATGAGGATCGCTTTAACTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCATTCATTGATCAGGCAGTTTATTGCCGGTGA	1527	0.4172	MNNSNNNRARYPPGIGYGRGGGGGGDGGGFNPNHNQNAPFQPRPSYQQQQQQHQHQQHYAQRNLVPQQQQQQQQWLRRAQLGAGGSESNVVDEVEKTVQTEASDSSSQDWKARLKAPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQAVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCTMLVMDEADKLLSPEFQPSIQQLIQFLPSNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYCR*	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan11g0932	508	CDD	SF2_C_DEAD	346	475	-	-
	Lan11g0932	508	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	165	335	IPR014001	-
	Lan11g0932	508	SMART	ultradead3	153	349	IPR014001	-
	Lan11g0932	508	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 6	43	508	-	-
	Lan11g0932	508	MobiDBLite	consensus disorder prediction	30	79	-	-
	Lan11g0932	508	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	345	505	IPR001650	-
	Lan11g0932	508	Pfam	DEAD/DEAH box helicase	159	323	IPR011545	GO:0003676\|GO:0005524
	Lan11g0932	508	Gene3D	-	339	507	IPR027417	-
	Lan11g0932	508	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	134	162	IPR014014	GO:0003724
	Lan11g0932	508	Gene3D	-	91	338	IPR027417	-
	Lan11g0932	508	CDD	DEADc_DDX6	136	336	-	-
	Lan11g0932	508	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	43	508	-	-
	Lan11g0932	508	SMART	helicmild6	385	466	IPR001650	-
	Lan11g0932	508	Pfam	Helicase conserved C-terminal domain	360	466	IPR001650	-
	Lan11g0932	508	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	204	488	IPR027417	-
	Lan11g0932	508	MobiDBLite	consensus disorder prediction	92	110	-	-
	Lan11g0932	508	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	281	289	IPR000629	-
	Lan11g0932	508	MobiDBLite	consensus disorder prediction	1	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g0932	Lan-Chr11	9468065	9474308	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g0932	136	498	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.904	3.73e-94	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g0932	K12614		-	csv:101203201	842.802