Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0928 ATGTCATTCACTGGAACTTTGGACAAATGCAAGGCTTGTGATAAGACTGTTTATGTTGTTGACTTGTTAACTCTTGAAAACATTCCTTACCATAAAAACTGCTTCAAATGTACCCACTGCAATGGAGTACTTACGATGAACACATACTCCTCAATGGATGGAGTACTATACTGCAGAACACATTTTGAACAACTTTTCAAAGAATCTGGCAATTTTAGCAAGAACTTTCAAGCAACAGCAAAGCCTTCTGAAAAGCAATCTGAGCTGAACAGGACCCCAAGTAAGCTCTCTTCCATGTTCAGTGGAACTTTAGACAAATGCTCAGTTTGCACAAAAACTGTCTATCCACTTGAAAAGGTGACACTAGAAGGGGAATGCTTTCACAAGAATTGCTTTAGGTGTGCTCATGGAGGGTGTCACCTAACACATTCCTCCTATGCTGCTCTAGATGGTGTCCTTTATTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAACTATAGCCATGTACTCCAAGCTGCTGCACACAAGAGGAATGGTTCTTCTACACCTCCTGAAACTATTGAGTTGCCACCACAAGAATTGCCACCACAATCTGAGGACAAAAAAGAAGAAGCAGAAGAAGAAACTTCTTGA 642 0.4081 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKNCFKCTHCNGVLTMNTYSSMDGVLYCRTHFEQLFKESGNFSKNFQATAKPSEKQSELNRTPSKLSSMFSGTLDKCSVCTKTVYPLEKVTLEGECFHKNCFRCAHGGCHLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRNGSSTPPETIELPPQELPPQSEDKKEEAEEETS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0928 213 Gene3D Cysteine Rich Protein 103 171 - -
Lan11g0928 213 SMART lim_4 106 158 IPR001781 -
Lan11g0928 213 SMART lim_4 9 61 IPR001781 -
Lan11g0928 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Lan11g0928 213 MobiDBLite consensus disorder prediction 178 213 - -
Lan11g0928 213 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lan11g0928 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Lan11g0928 213 Pfam LIM domain 10 65 IPR001781 -
Lan11g0928 213 Pfam LIM domain 107 162 IPR001781 -
Lan11g0928 213 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Lan11g0928 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lan11g0928 213 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Lan11g0928 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lan11g0928 213 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lan11g0928 213 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Lan11g0928 213 Gene3D Cysteine Rich Protein 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0928 Lan-Chr11 9443082 9444937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan11g0928 LIM 3.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0928 - K09377 gmx:100305845 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0928 11 9443082 9444937 Lan11g0928 11 9443082 9444937 ECH
Lan11g0928 11 9443082 9444937 Lan9g0767 9 12555377 12557363 LSH