Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0910 ATGAATATGATGAGACGGCTGAAGAGCATTGCTTCTGGGAGAACCTCCATTTCTTCAGATCATAGTACAGATTCTAGCACAAAAAGAGCTAAGTTTGATCAAGAAACTGACGGGAAGGTCAATGAGGAAACAAATACCGTCGAGAGAGGCAGCAAAGACCAGGCGGAGAGTGTAGGTACATCGCAAGAAACTACGGTCGACACATCCAATGTATCTACGGTAGCTAGAACTGGGAAGCCAACTTATGATCAACTTCCAAAAGAATTGCATGAAATGAAAATTAGAGATGATAAAGCCAATAAGAATAATGAGAAGGATATAGAAGCAACTATAGTGAGTGGTCATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCAGACAATCTCGTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATCAAGAAGGTGCTGCAAGATAAGAGATATAAAAATAGGGAGCTCCAGGTTATTCGCATGCTTGAACATCCTAACGTTGTTCAACTAAAGCACTGTTTCTTTTCAACTACCGATAAAGATGAGCTGTACCTTAACCTAGTTCTGGAGTATGTGCCTGAAACTGTCTACAAAGTTTCAAAGAACTTTATTCGGACACACCATCATATGCCTATCATTTATGTTCAACTCTATACATACCAGATATGCCGTGCATTAAATTATTTACATCAAGTGATCGGCGTCTGTCATCGTGACATCAAACCCCATAACCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTACCTGGTGAGCCCAACATATCATACATATGCTCTCGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATGTGGTCTGTTGGTTGTGTTTTGGCTGAGTTCCTTATCGGACAGCCTTTGTTTCCCGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATCAAGATCTTGGGGACACCAACCAGAGAAGAAATAAAGTGCATGAATCCGAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCACCCATGGCACAAGATTTTTGACAAGAGGATGCCGCCTGAAGCAGTGGATCTTGTGTCAAGGCTTCTTCAGTATTCGCCAAATCTACGTTGCACTGCTTTGGCTGCATGTGCACACCCCTTCTTCGATAGTCTACGAGACCCAAGTTTTAGCTTGCCAAATGGGCGACCGGTGCCACCTTTGTTCAATTTCACAGATCAAGAACTGGCCGATGCACCTGACGAGTTACGTCAACGTCTCATCCCTGCACATGCAAGGACTTGA 1410 0.4262 MNMMRRLKSIASGRTSISSDHSTDSSTKRAKFDQETDGKVNEETNTVERGSKDQAESVGTSQETTVDTSNVSTVARTGKPTYDQLPKELHEMKIRDDKANKNNEKDIEATIVSGHGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVIRMLEHPNVVQLKHCFFSTTDKDELYLNLVLEYVPETVYKVSKNFIRTHHHMPIIYVQLYTYQICRALNYLHQVIGVCHRDIKPHNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAEFLIGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFDKRMPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDSLRDPSFSLPNGRPVPPLFNFTDQELADAPDELRQRLIPAHART* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0910 469 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0910 469 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0910 469 CDD STKc_GSK3 135 427 IPR039192 -
Lan11g0910 469 MobiDBLite consensus disorder prediction 24 50 - -
Lan11g0910 469 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan11g0910 469 MobiDBLite consensus disorder prediction 1 83 - -
Lan11g0910 469 SUPERFAMILY Protein kinase-like (PK-like) 139 453 IPR011009 -
Lan11g0910 469 PANTHER SHAGGY-LIKE KINASE 6 468 - -
Lan11g0910 469 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
Lan11g0910 469 MobiDBLite consensus disorder prediction 51 79 - -
Lan11g0910 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Lan11g0910 469 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 468 - -
Lan11g0910 469 MobiDBLite consensus disorder prediction 9 23 - -
Lan11g0910 469 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
Lan11g0910 469 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0910 Lan-Chr11 9214662 9219661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0910 146 431 Core Cell Cycle Gene Families AT1G76540 36.735 5.71e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lan11g0910 Pkinase 9.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0910 K00924 - gmx:100811346 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0910 11 9214662 9219661 Lan11g0910 11 9214662 9219661 ECH
Lan13g0987 13 14285689 14290816 Lan11g0910 11 9214662 9219661 PCT
Lan11g0910 11 9214662 9219661 Lan13g0987 13 14285689 14290816 PCT