Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0901 ATGGTGGAAGAGGGTGCATATGCCATTGCGGTTGATACTCGTTCGACAGAAGATTTTTTGTTACAAGCACAAGAACTTGTTCCTACTGCACTTGATAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGGTGGAAGATGATCATTTCCAAATTGGAGCAAATTCCGTCGCGTTTATCGGACTTGTCTAGCCATCCTTGCTTCTCCAAGAATGCACTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGTCACTCAGAGAAGCAATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAATACGAAGGTAAGCTTCGGATGCAAAGTGATCTTGATGCATTAACTGGGAAACTCGATTTGAATTTAAGGGATTGTGGCCTATTGATCAAGACGGGCGTGCTTGGTGAGGCTACTCTGCCATTGACTGTGTCCGGTCCTATGGCAGAATCTGATATTGCAACACATAGCAATATAAAGGAGTTGCTTGCACGCCTTCAGATCGGTCACTTGGAAGCGAAGCATAGAGCTTTAGATAAGCTCTATGATGTTATGAGAGAAGATGAGAAGAATGTTTTAGCTGTTCTCGGTAGGAGCAATGTTGCTGCTTTAGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGATGACCGTTACCGTTATATGCTCACTTGTCGAATCTGGAAGCTGCGAAAACTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTAGGCTTGTTGAATCAGGTAGTTGTGTGGGTAAAGAGAAGGCTATTGTGTCACTTCAGAGGTTGTCAATGTCAGCTGAAACAACCCGTGCAATTGTCGGACACAGCGGTGTTCGTCCATTGATTGAGCTTTGTGAAACCGGTGATTCAGTGTCACAGGCTGCGGCTGCTTGTACTTTGAAGAATATATCATCTGTTCCGGAGGTTAGACAGGCTCTGGCTGAAGAAGGCATTGTGAGGGTTATGATTAATCTTCTTAACAACGGAATTTTGTTGGGTACCAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAGCAACGAGAATCTTAGAAGGTCTGTTATATCAGAAGGCGGTGTTAAGAGTCTTATGGCTTATCTTGATGGTCCACTTCCTCAAGAGTCTGCAGTTGGAGCACTGAGGAATTTGGTTGGATCAGTTCCTGAGGAAACTTTGGTTTCACTTGGTTTGCTTCTGTGTTTGGTTCACGTGCTCAAGTCCGGATCATCGGGTGCTCAGCAAGCTGCAGCATCGGTTATCTGCCGGGTTTGCAGCTCAATTGAGATGAAGAAAATGATAGGTGAAGCTGGTTGCATCCCTCTTCTTATCAAGATGCTTGAGGCTAAAGCAAACAGTGCTAGAGAGGTTGCTGCACAAGCAATTGCGAGCTTGATGGTTCTGTCACAGAATCAAAGAGAAGTTAAGAAGGGCGATAAAAGTGTGCCGAATCTGGTCCAGTTGCTTGATTCGAGTCCACAGAACACTGCAAAGAAATATGCGGTTTCTTGCCTCGGATCACTTTCTTCAAGTAAGAGATGTAAGAAGCTGATGATTTCTTATGGAGCAATTGGTTATCTGAAGAAACTTGTAGATATGGACATTCCAGGAGCTAAAAAGCTACTTGAAAGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAATGA 1683 0.4421 MVEEGAYAIAVDTRSTEDFLLQAQELVPTALDKAREVKGFPGRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKSLREAIELAELCVKEKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLTVSGPMAESDIATHSNIKELLARLQIGHLEAKHRALDKLYDVMREDEKNVLAVLGRSNVAALVQLLTATSPRIREMTVTVICSLVESGSCENWLVSEGVLPPLIRLVESGSCVGKEKAIVSLQRLSMSAETTRAIVGHSGVRPLIELCETGDSVSQAAAACTLKNISSVPEVRQALAEEGIVRVMINLLNNGILLGTKEYAAECLQNLTASNENLRRSVISEGGVKSLMAYLDGPLPQESAVGALRNLVGSVPEETLVSLGLLLCLVHVLKSGSSGAQQAAASVICRVCSSIEMKKMIGEAGCIPLLIKMLEAKANSAREVAAQAIASLMVLSQNQREVKKGDKSVPNLVQLLDSSPQNTAKKYAVSCLGSLSSSKRCKKLMISYGAIGYLKKLVDMDIPGAKKLLERLERGKLRSLFSRK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0901 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 363 IPR000225 GO:0005515
Lan11g0901 560 SUPERFAMILY ARM repeat 155 535 IPR016024 -
Lan11g0901 560 Gene3D - 152 390 IPR011989 -
Lan11g0901 560 Gene3D - 392 541 IPR011989 -
Lan11g0901 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 560 - -
Lan11g0901 560 SMART arm_5 390 429 IPR000225 GO:0005515
Lan11g0901 560 SMART arm_5 185 225 IPR000225 GO:0005515
Lan11g0901 560 SMART arm_5 471 513 IPR000225 GO:0005515
Lan11g0901 560 SMART arm_5 350 389 IPR000225 GO:0005515
Lan11g0901 560 SMART arm_5 308 349 IPR000225 GO:0005515
Lan11g0901 560 SMART arm_5 430 470 IPR000225 GO:0005515
Lan11g0901 560 SMART arm_5 267 307 IPR000225 GO:0005515
Lan11g0901 560 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 560 - -
Lan11g0901 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0901 Lan-Chr11 9084055 9087747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0901 400 543 U-box Gene Family AT3G54790 29.167 1.78e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0901 - - gmx:100809488 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0901 11 9084055 9087747 Lan11g0901 11 9084055 9087747 ECH