Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0900 ATGAAGCCCATCTTTGTTGGAAACCTTGATTTCGATTCGCGCCAATCTGATGTTGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATCGAGTTGATCTCAAATCTGGGTTTGCTTTTATCTACATGGAAGATGAACGTGATGCTGATTATGCTATTAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCAGATACGTGTGGAGTGGTCTAAGCAAGACCGTGACAATAGAAGGCCAGGTGGTGATTCAAAGAAATCTTCAACAAATACGAGGCCATCCAAGACTTTGTTTGTCATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAACCACTTTGATCCCTATGGGAAAATCTCGAATATAAGGATTAGAAGGAATTTTGCTTTTATTCAGTTTGAAACACAGGAGGATGCTACTAGAGCTTTGGATGCAACTAACTTGAGCAAGTTTCTGGATCGTGTTATCACTGTGGAGTATGCTATAAAAGATGATGATGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGACGTGACTCCCCTGATGGGAGATATGATCGTCGCAGATCCCCAAGTCCATATCGTAGAGGTAGGGGCAGCCCAGATTATGGTCATGGATCAAATCCTGCTTCCAGGCCAGAACCTAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATTAATGGGAGATATGACAGCCGGTCCCCGCCAGCCCGAGAAAGGTCGCGATCCTGA 753 0.4489 MKPIFVGNLDFDSRQSDVERLFRRYGKVDRVDLKSGFAFIYMEDERDADYAIRRLDRTEFGRKGRQIRVEWSKQDRDNRRPGGDSKKSSTNTRPSKTLFVINFDPVHTRTRDLENHFDPYGKISNIRIRRNFAFIQFETQEDATRALDATNLSKFLDRVITVEYAIKDDDDRRNGYSPDRRGRDSPDGRYDRRRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPINGRYDSRSPPARERSRS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0900 250 PANTHER - 4 214 - -
Lan11g0900 250 SMART rrm1_1 97 163 IPR000504 GO:0003723
Lan11g0900 250 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lan11g0900 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Lan11g0900 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lan11g0900 250 MobiDBLite consensus disorder prediction 169 250 - -
Lan11g0900 250 Gene3D - 87 213 IPR012677 -
Lan11g0900 250 SUPERFAMILY RNA-binding domain, RBD 4 170 IPR035979 GO:0003676
Lan11g0900 250 MobiDBLite consensus disorder prediction 70 86 - -
Lan11g0900 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 214 - -
Lan11g0900 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Lan11g0900 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Lan11g0900 250 MobiDBLite consensus disorder prediction 70 94 - -
Lan11g0900 250 Gene3D - 1 86 IPR012677 -
Lan11g0900 250 MobiDBLite consensus disorder prediction 221 250 - -
Lan11g0900 250 MobiDBLite consensus disorder prediction 169 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0900 Lan-Chr11 9079225 9082543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0900 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 2.69e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0900 K12893 - gmx:100797778 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0900 11 9079225 9082543 Lan11g0900 11 9079225 9082543 ECH