Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan11g0899 | ATGAGTTCAGGCACCAATTTAGTGACCACAGTCATTGGTTTTGGGCTGAGTGCAACTTTCATTGTATTTGTGTGCACAAGAATAATTTGTGGAAGACTAACAGGGAGTGTGGGATTACGGACTATACATGAGATTGAATCAATAAGAAGAGATATAGAACAGCCAGAACATCATGTTAATGGGCCTGATCCTGCTCTTATTGCTGCAATCCCTTCTTTCAAGTTCAACCAAGAGGCCTTCACTTCCGTTGAATATACACAGTGTGTGATATGTTTGGCAGATTACAAAGAACAAGAGTTATTACGCATCATACCAAAATGTGGCCACAGTTTTCATCTTGCTTGCGTTGATTTGTGGCTGAGAAAACAATCTACATGTCCCTTATGCCGTTTACCACTGCAAAATGCTTGTGACACAAAACATGTAGGACCTGTAACATTTACCATCAACCAGTCTCATGATGAGTCTAATAGTCCAGAAAGGAACATAAACAATGAGTTATGTTGA | 507 | 0.3964 | MSSGTNLVTTVIGFGLSATFIVFVCTRIICGRLTGSVGLRTIHEIESIRRDIEQPEHHVNGPDPALIAAIPSFKFNQEAFTSVEYTQCVICLADYKEQELLRIIPKCGHSFHLACVDLWLRKQSTCPLCRLPLQNACDTKHVGPVTFTINQSHDESNSPERNINNELC* | 169 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan11g0899 | 168 | SUPERFAMILY | RING/U-box | 87 | 141 | - | - | |
Lan11g0899 | 168 | Pfam | Ring finger domain | 87 | 130 | IPR001841 | - | |
Lan11g0899 | 168 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 139 | IPR013083 | - | |
Lan11g0899 | 168 | PANTHER | OS11G0150450 PROTEIN | 1 | 158 | - | - | |
Lan11g0899 | 168 | CDD | RING-H2_EL5_like | 87 | 130 | - | - | |
Lan11g0899 | 168 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 130 | IPR001841 | - | |
Lan11g0899 | 168 | SMART | ring_2 | 88 | 129 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan11g0899 | Lan-Chr11 | 9016907 | 9018706 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan11g0899 | 52 | 136 | C3H Transcription Factor Family | AT4G33565 | 40.230 | 2.12e-19 | 82.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan11g0899 | - | - | gmx:100780922 | 256.144 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan11g0899 | 11 | 9016907 | 9018706 | Lan11g0899 | 11 | 9016907 | 9018706 | ECH | |
Lan13g0981 | 13 | 14163764 | 14166280 | Lan11g0899 | 11 | 9016907 | 9018706 | PCT | |
Lan11g0899 | 11 | 9016907 | 9018706 | Lan13g0981 | 13 | 14163764 | 14166280 | PCT |