Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0899 ATGAGTTCAGGCACCAATTTAGTGACCACAGTCATTGGTTTTGGGCTGAGTGCAACTTTCATTGTATTTGTGTGCACAAGAATAATTTGTGGAAGACTAACAGGGAGTGTGGGATTACGGACTATACATGAGATTGAATCAATAAGAAGAGATATAGAACAGCCAGAACATCATGTTAATGGGCCTGATCCTGCTCTTATTGCTGCAATCCCTTCTTTCAAGTTCAACCAAGAGGCCTTCACTTCCGTTGAATATACACAGTGTGTGATATGTTTGGCAGATTACAAAGAACAAGAGTTATTACGCATCATACCAAAATGTGGCCACAGTTTTCATCTTGCTTGCGTTGATTTGTGGCTGAGAAAACAATCTACATGTCCCTTATGCCGTTTACCACTGCAAAATGCTTGTGACACAAAACATGTAGGACCTGTAACATTTACCATCAACCAGTCTCATGATGAGTCTAATAGTCCAGAAAGGAACATAAACAATGAGTTATGTTGA 507 0.3964 MSSGTNLVTTVIGFGLSATFIVFVCTRIICGRLTGSVGLRTIHEIESIRRDIEQPEHHVNGPDPALIAAIPSFKFNQEAFTSVEYTQCVICLADYKEQELLRIIPKCGHSFHLACVDLWLRKQSTCPLCRLPLQNACDTKHVGPVTFTINQSHDESNSPERNINNELC* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0899 168 SUPERFAMILY RING/U-box 87 141 - -
Lan11g0899 168 Pfam Ring finger domain 87 130 IPR001841 -
Lan11g0899 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Lan11g0899 168 PANTHER OS11G0150450 PROTEIN 1 158 - -
Lan11g0899 168 CDD RING-H2_EL5_like 87 130 - -
Lan11g0899 168 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lan11g0899 168 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0899 Lan-Chr11 9016907 9018706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0899 52 136 C3H Transcription Factor Family AT4G33565 40.230 2.12e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0899 - - gmx:100780922 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0899 11 9016907 9018706 Lan11g0899 11 9016907 9018706 ECH
Lan13g0981 13 14163764 14166280 Lan11g0899 11 9016907 9018706 PCT
Lan11g0899 11 9016907 9018706 Lan13g0981 13 14163764 14166280 PCT