Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0875 ATGAGTCGCAAAAGAGACAAACCCTACTTTTCCCGCCACGCCCCATACACCGCCTACAAGCGCCGTCGCCCTCCGCCGGAACCACCTCTCGAGGTGGAGGAGGACAAACCGACGATGAGGCCAGCACCGCCATCCGCACTGGTTGTTATGGGCCTTCCTCAAGACTGCTCCGTCCTCGACCTCAAGTCACGCTTCGAGATCTACGGCCCCATTGGACGCATCCGCATCGACCGTGACGCCGTCGGATACATCACTTACCGGAACAAGGAATCCGCCGATGCCGCCATCGCTGCCAGCGTCGACCCTTCCTTCGGGATCACCGTTGACTCCAAAAAGGTTCAGGTGTTATGGGCAACTGATCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAGGGTCTATGTCAAAGCTTGTGCGTGCTGAGATACCATTGAGGAAGCATGGAAGAGGTAATAGACTCGCATCAGCGATAGGGAATACCAAAACTACCGAGGATAGCTCAGGTAGCTCAGTTCTACAACTGCCTTTCGGTGGCAGAGAAATTGTTGCTTATGATGATATCCTGTAA 579 0.5389 MSRKRDKPYFSRHAPYTAYKRRRPPPEPPLEVEEDKPTMRPAPPSALVVMGLPQDCSVLDLKSRFEIYGPIGRIRIDRDAVGYITYRNKESADAAIAASVDPSFGITVDSKKVQVLWATDPLAMWREGVGNNKDKGSMSKLVRAEIPLRKHGRGNRLASAIGNTKTTEDSSGSSVLQLPFGGREIVAYDDIL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0875 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 97 IPR000504 GO:0003723
Lan11g0875 192 SUPERFAMILY RNA-binding domain, RBD 20 126 IPR035979 GO:0003676
Lan11g0875 192 MobiDBLite consensus disorder prediction 1 43 - -
Lan11g0875 192 Gene3D - 26 166 IPR012677 -
Lan11g0875 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 120 IPR000504 GO:0003723
Lan11g0875 192 MobiDBLite consensus disorder prediction 24 38 - -
Lan11g0875 192 SMART rrm1_1 46 116 IPR000504 GO:0003723
Lan11g0875 192 CDD RRM_SF 47 115 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0875 1 192 Homeobox Transcription Factor Family AT1G27050 56.098 5.72e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0875 - - gmx:106797175 288.885