Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0863 ATGTCTCACTTCGGAAGGTCTGGTCCTCCAGATATTTCTGACACCTACTCTCTCCTTGTTCTCAACATCACTTTCCGTACTACTGCTGATGACCTATTCCCCTTGTTTGATAAGTACGGCAAGGTTGTCGACATTTTCATCCCCAAAGATCGAAGGACCGGTGATTCAAGGGGTTTTGCATTTGTGCGCTACAAGTATGCTGATGAAGCTTCAAAAGCTGTGGATAGGCTCGATGGAAGAATGGTTGATGGCCGTGAAATAACTGTTCAGTTTGCAAAGTATGGCCCAAATGCTGAGAGAATTCACAAGGGAAGGATAATTGAAACATCCCCAAAACCAATTTCAAGGCACGGATCAAGGAGCCGCAGTCCCAGGAAAAGGCATCGTGATGAGTACCGAGACAGGGACTATAGGAGGAGAAGCCGCAGCAGAAGTTATGATAGATATGAACGCGACAGATACCATGGGAGAGACAGGGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCCAGTCCTGATTACAAGAACCGTAGAAGAGGACGCTATGACGATGAGCGTGATAGCAGGAGTCCAAGTCGATCTGTGGATAGCCGTTCCCCTGCCCGACACAGTCCTAGTCCTCGAAGGAGTCCTTCCCCAAAGAAGAGTATCTCCCCTCGAAGGAGTCCTTCCCCAAAGAAGAGTATCTCCCCTCGAAGGAGTCCTTCCTCAAAGAAGAGTATCTCCCCTCGTAGGAGTCCTTCCCCAAGGAAAAGCCTACGAGATGAAAGTCCTGACTATCGTAGCCGTGATGGACGGTCTGCTTCACCTCGCAGTGTCTCACCACGTGGTCGTGCTTATGCTTCACGAAGCCCATCCCCTCGAAAATCAAATGGTGATGAATGA 885 0.496 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGDSRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPKPISRHGSRSRSPRKRHRDEYRDRDYRRRSRSRSYDRYERDRYHGRDRDYRRRSRSRSASPDYKNRRRGRYDDERDSRSPSRSVDSRSPARHSPSPRRSPSPKKSISPRRSPSPKKSISPRRSPSSKKSISPRRSPSPRKSLRDESPDYRSRDGRSASPRSVSPRGRAYASRSPSPRKSNGDE* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0863 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 294 - -
Lan11g0863 294 MobiDBLite consensus disorder prediction 125 193 - -
Lan11g0863 294 MobiDBLite consensus disorder prediction 248 266 - -
Lan11g0863 294 SMART rrm2_1 17 90 IPR003954 GO:0003676
Lan11g0863 294 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lan11g0863 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lan11g0863 294 MobiDBLite consensus disorder prediction 194 247 - -
Lan11g0863 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lan11g0863 294 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Lan11g0863 294 MobiDBLite consensus disorder prediction 100 294 - -
Lan11g0863 294 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 294 - -
Lan11g0863 294 Gene3D - 4 103 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0863 Lan-Chr11 8465841 8468877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0863 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 4.81e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0863 K12891 - gmx:100778928 301.597