Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0839 ATGAGTGATCATTTGGTTCTCTCTGTTGACCGTCTCGCCCGCCCTGTCCCCGTTGACCCTGTCGCGCAACCTCCTCAGCTCCCTTCCGACACGCCACCTTCTCCGCCGCAGTCTCAGGCCGAGGGTGCCGTTGCCGGAACCTCTGAATCGGCTCCGCCGGTGAACCATGACGACGAAGCCGAATCGGAGAACGGAGAGGGTGGTGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAGGATGGAGTCTCCAATTTGGAGAGCCCCTGTGCCTGCAGTGGGAGCCTCAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGCAATGAGAAAGGAGACATTACTTGTGAGATCTGTCATCAGCCTTATCAATCTGGTTATACCGCCCCACCACCTCGTCTTAATCCTGATGAAACTACCATTGATATAGGAGGCTGGACAATATCTGGCACACCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATAGCAGAGGCAGAACGTCAATTCTTGGATGCCGAATATGATGAGTATGCTGCTTCTAATGCCAGCGGGGCTGCATTTTGCCGCTCAGCTTTTCTAATTTTAATGGCCCTTTTGATCTTGCGGCATGCACTCTCTGTCACAGATGGTGATACTTCTGATGATGACCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTGTCCTGCAACGTCGACGTCAAAGACAAGAGGCTGCAGCTCTAGCAGCAACACAGGTTGCTTTTGTTCTGCAATCTGGGCAGCGTAGGGGTCTACAATTTGGAATTCCACCTGGACCCACAGTGCACCCGGAACAAGCTTAG 891 0.5196 MSDHLVLSVDRLARPVPVDPVAQPPQLPSDTPPSPPQSQAEGAVAGTSESAPPVNHDDEAESENGEGGDEEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRLNPDETTIDIGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAFLILMALLILRHALSVTDGDTSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISVLQRRRQRQEAAALAATQVAFVLQSGQRRGLQFGIPPGPTVHPEQA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0839 296 CDD RING_CH-C4HC3_MARCH 80 126 - -
Lan11g0839 296 ProSiteProfiles Zinc finger RING-CH-type profile. 72 132 IPR011016 GO:0008270
Lan11g0839 296 Pfam Protein of unknown function (DUF3675) 132 249 IPR022143 -
Lan11g0839 296 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 287 IPR033275 -
Lan11g0839 296 MobiDBLite consensus disorder prediction 18 35 - -
Lan11g0839 296 SUPERFAMILY RING/U-box 78 130 - -
Lan11g0839 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 136 IPR013083 -
Lan11g0839 296 Pfam RING-variant domain 80 125 IPR011016 GO:0008270
Lan11g0839 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 287 - -
Lan11g0839 296 Coils Coil 167 187 - -
Lan11g0839 296 MobiDBLite consensus disorder prediction 1 71 - -
Lan11g0839 296 SMART ringv_2 79 126 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0839 Lan-Chr11 8146906 8151128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0839 79 125 C3H Transcription Factor Family AT2G37950 46.000 1.31e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0839 - - lang:109359054 546.584