Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0833 ATGGGCAGGGTAAAGCTAAAGATAAAGAAATTGGAGAACACCAATGGCCGTCAAGCAACATATGCTAAAAGAAAGAATGGGATCATTAAGAAAGCTTCTGAGTTATCTATATTGTGTGATATTGATATTATACTTCTAATGTTCTCACCAACTGGAAAACCTTCATTATGCAGAGGAAGGCGCAGTAACTTTGAGGAGATTATCACAAAGTTTGCTCAAATGACTCCACAGGAAAGGGCAAAAAGGAAGCTAGAGAGTCTTGAAGCACTGAAGAAAACGTTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTTATGGTACAAGTAGTCAAACTATTGAGGAGCTAAGTAATCAATCCAAGCAATTACAGACTTTGATTTCTGAAAGAAACAAAAGACTAAGCCATTGGACTGACTTTGGTAAAATCAGTGATGCTGAAAAACTGGAACAAATGGAAAATTCATTAAAAGAATCACTTAATCAAATTCGAACGTGTAAGGAAAATATCCAAAAGCAACAACTTGCATCACTGCAATGCAATAATAACCAGTTCAATGAAATGCGTATTCCCTTCATAATGAATGCTGATCAGCATCTCCAACCTTTGTCATGGATTGCTAATAGTGACAGCCAAAATATGGTTTTACAAGAGGACTCAAGATTTCTTCAACATAGAGATGTAGAAGGCTCTACAAGCTCCTCTTTTGGAACTTATGCAAGTTATCTTGGCTCGAGTTCGAAAACCGATATCTCTAATTCCGGGCAAGAAAATGGTGTTCTTAGTGACTTGAGCAGCAATGCTCCAGTGAGACTACAATTAAATGGACAGTTTCCATGCCAACCATACAATTTTAATGTACTGAATGATATAAAGTTCCAACTAGAAGCAGAGATGAATCCACATGAAAACCATGTAGATTATCATGTGAATGGAAGATTTGAAGCACCAAGGCCTGGTTATGACTCTAACCAATACAATTGGACTTCTACATCAGGGCCTTGTGCTGTTACTATGCTTGATGAATATTTGATTAGCCAGACCAGTTTTCCTCAGGTGCATTTCGGCTTCACATAG 1080 0.3713 MGRVKLKIKKLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPTGKPSLCRGRRSNFEEIITKFAQMTPQERAKRKLESLEALKKTFKKLDHDVNVQEFYGTSSQTIEELSNQSKQLQTLISERNKRLSHWTDFGKISDAEKLEQMENSLKESLNQIRTCKENIQKQQLASLQCNNNQFNEMRIPFIMNADQHLQPLSWIANSDSQNMVLQEDSRFLQHRDVEGSTSSSFGTYASYLGSSSKTDISNSGQENGVLSDLSSNAPVRLQLNGQFPCQPYNFNVLNDIKFQLEAEMNPHENHVDYHVNGRFEAPRPGYDSNQYNWTSTSGPCAVTMLDEYLISQTSFPQVHFGFT* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0833 359 CDD MADS 2 54 - -
Lan11g0833 359 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan11g0833 359 Coils Coil 77 97 - -
Lan11g0833 359 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lan11g0833 359 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lan11g0833 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Lan11g0833 359 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan11g0833 359 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan11g0833 359 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan11g0833 359 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 349 - -
Lan11g0833 359 Coils Coil 114 134 - -
Lan11g0833 359 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lan11g0833 359 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 349 - -
Lan11g0833 359 Coils Coil 150 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0833 Lan-Chr11 7921184 7928928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0833 1 352 Type I MADS-box Gene Family AT2G03060 46.891 2.21e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan11g0833 SRF-TF 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0833 - - lang:109356063 599.356