Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0822 ATGAAGAGAGATCTGTTGCAGTTACATTTTGAAACTCCAATTAGTGACGCCATTTCCAGAATCCGATTCGCTCCTCACTCCAACAACCTCCTCATTTCTTCCTGGGACTCTAGTCTTCGATTATACGATGTTGATGCCTCTGTGCTCAGAGTAGAAGCTCATTCGGAAGCTTCACTTCTCGATTGTTGCTTCCAGGATGATGACTCCGTTGCTTTCTCTGCTGCTTCTGATGGACTCATCCGAAGGTATGACTTGCATTCAGGAATTATCGATACAGTGGGCAGCCATGACGATATAGCAACATGTATTGGATATTCCAATGAAACATACCAGTTGATAACATCTGGATTTGACAAAAAATTACTGTTTTGGGACACCCGTGCGGAGAAGGCTTCATCATGCTTGAGAAGTCTAAGTACAGAGGTGAACTGCATGTCTGTCTCTGCGTTTAATCTTACAGTAGGAGCTGGAGCATCAGTACATGTATATGATTTACGGAAGTCTGAGAAGCCAATTCAGTCAAAGGAACCATACAATGGCACACAGTTAAGATGTGTCAGTTCAATTCCTTATGCTAAAGGGTTTGCAGTTGGGTCAGTGGATGGACGAGTTGCACTGCAAATTTCCTATTCATCTAGTTCAAATGATATCGGATATATATTCCGGTGTCATCCAAAATCGAAGGATGCAAAGCATCATTTCGCATCAGTGAATGACATTGCATTCAGTCCACTTGTTTCTGGCACTTTTGTCACCAGTGACAATGAAGGTCATGTTATCATGTGGGATGCTGGAAGTAGGAAAAGACTTGCTGAGTTGCCTACGTACCCAAACAGTATTGCATCTATGTCATACAACCATGTGGGACAGCTTCTGGCTGTAGCATCAAGCCATACATACCAAGAAGCAAACGAAATAGAAGGGCCTCCTCAAGTATTCATCCATAACGTGGACAGCTTTGAAACTAGATCAGTTTCATCTGCCAGTAAAAGACTCCCACAATTCTTTCTCTCTTCTCCTTGTTTGTTAGTTGGTAAGTGTGATCTGAATATGTCTGACGAAGAGCATCATTTTGAGGCGAAGGGTGATGCAGGCGCTTCCAAAACCTTTCCTCAACAAGCTGGTACCATTCGCAAGAACGGTTACATTGTCATCAAAAACAGACCCTGCAAGGTTGTGGAGGTTTCAACTTCCAAAACCGGCAAGCATGGACATGCTAAGTGTCACTTTGTTGGCATTGACATCTTCACTGGAAAGAAGCTAGAAGATATTGTCCCTTCTTCCCACAATTGTGATGTCCCTCATGTCAATCGTATTGACTACCAGCTCATTGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACGGACAATGGTGGTACAAAGGATGACCTCAAGCTTCCATCAGATGACAATCTGCTTTCGCAGATCAAGGATGGATTTGCTGAGGGTAAAGATCTGGTTGTGTCTGTTATGTCTGCAATGGGTGAGGAGCAGATCAATGCCCTTAAGGACATTGGCCCCAAGTAA 1530 0.4346 MKRDLLQLHFETPISDAISRIRFAPHSNNLLISSWDSSLRLYDVDASVLRVEAHSEASLLDCCFQDDDSVAFSAASDGLIRRYDLHSGIIDTVGSHDDIATCIGYSNETYQLITSGFDKKLLFWDTRAEKASSCLRSLSTEVNCMSVSAFNLTVGAGASVHVYDLRKSEKPIQSKEPYNGTQLRCVSSIPYAKGFAVGSVDGRVALQISYSSSSNDIGYIFRCHPKSKDAKHHFASVNDIAFSPLVSGTFVTSDNEGHVIMWDAGSRKRLAELPTYPNSIASMSYNHVGQLLAVASSHTYQEANEIEGPPQVFIHNVDSFETRSVSSASKRLPQFFLSSPCLLVGKCDLNMSDEEHHFEAKGDAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVSLLTDNGGTKDDLKLPSDDNLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0822 509 Gene3D - 436 508 IPR012340 -
Lan11g0822 509 TIGRFAM eIF_5A: translation elongation factor IF5A 368 503 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lan11g0822 509 CDD S1_eIF5A 436 506 - -
Lan11g0822 509 ProSitePatterns Trp-Asp (WD) repeats signature. 112 126 IPR019775 -
Lan11g0822 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 134 IPR001680 GO:0005515
Lan11g0822 509 SMART eIF_5a_2 435 504 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lan11g0822 509 Gene3D - 2 326 IPR015943 GO:0005515
Lan11g0822 509 SUPERFAMILY WD40 repeat-like 13 297 IPR036322 GO:0005515
Lan11g0822 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 272 IPR001680 GO:0005515
Lan11g0822 509 SUPERFAMILY Translation proteins SH3-like domain 365 443 IPR008991 -
Lan11g0822 509 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.3 7 323 - -
Lan11g0822 509 Gene3D - 351 435 IPR014722 -
Lan11g0822 509 PANTHER MRNA EXPORT FACTOR AND BUB3 7 323 - -
Lan11g0822 509 SMART WD40_4 44 84 IPR001680 GO:0005515
Lan11g0822 509 SMART WD40_4 266 316 IPR001680 GO:0005515
Lan11g0822 509 SMART WD40_4 5 43 IPR001680 GO:0005515
Lan11g0822 509 SMART WD40_4 86 125 IPR001680 GO:0005515
Lan11g0822 509 SMART WD40_4 131 164 IPR001680 GO:0005515
Lan11g0822 509 SMART WD40_4 214 263 IPR001680 GO:0005515
Lan11g0822 509 SUPERFAMILY Nucleic acid-binding proteins 436 506 IPR012340 -
Lan11g0822 509 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 435 504 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lan11g0822 509 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 400 407 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0822 Lan-Chr11 7815442 7824687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0822 351 509 Eukaryotic Initiation Factors Gene Family AT1G13950 90.566 9.35e-101 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0822 K02180 - fve:101296375 670.233