Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0796 ATGGCTAGAAAAGTTTTATCCTTTTTACCCCAAAGACCCTTCTCTTCTATACCTGATATTCCCAACCTTTATTCCTTCCTTCAACCTTCACTTTTTTCCCTTAAAACCACCAACCAACAACAACAACCCCAAAACCAAAACCAAAACCTTCCAACTTCTCCACCAAACTCTTTCAACCAAGACCAAATCTCCACCCTTGAAACCACCCTTCACAAATCCATCGTCACAAACAACACTGATGAAGCATGGAAGTCTTTCAAATCCATCACTACCCTTCACTCTTTCCCTCCAAAACCACTCACCAATTCCCTCATTACCCACCTTTCCTCTCACTCTGACCTTCACAACCTCAAGAGAGCATTCACTTCTGCTGTCTATATTATGGAGAAGAATCCTATGATGTTGGAGCTTGAAACTGTTGCATCATTGCTTGAATCAATGAGGTGTGCCAACACTGCTGCCCCTGCTTTTGCCCTTGTCAAATGCATGTTCAAGAACAGGTTTTTCGTCCCGTTCGACACGTGGGGTGGCGTGCTTGCTGAGATTAGTAGGAAGAATGGGAACCTTGTTGCTTTCTTAAGGGTTTTTGAGGAGAATTGTAGGATTTGTTTGGATGAAAAGGTTGAGTCTATGAAACCTGATGTTGATGCTTGTAATGCAGCCTTGGAAGGTTGCTGTTATGAGCTTCAATCTGTGAGTGATGCTGAGAGGGTTATTGAAATAATGTCGAATTTGGGTGTTAGGCCAAATGAATTGAGTTTTGGGTTTCTCGGTTATTTGTATGCACTGAAGGGGTTTCAAGATAAGATAGATGAGTTAAAAAAATTGATGGTTGGTTTTGGCTACTCAAATAAGAAGAATCTTTATTCTAATTTGATTAGTGGTTATGTTAAGTCGGGTAATTTAGCTTCTGTTGAGTCAACTATTCTTAGTAGTTTGAATGATGGAGATGGCAAAGATTGGAATTTTGGTGAAGAAACTTTCTGTGGAGTAGTTAAGGAATATCTTCATAGGGGTAATATCAAGGGGTTAGCTAATTTGATTATTGAAGCTCAGAAGTTAGAGCCTTCGAATATTGAAGTTGGTCAATCTGTAGGTTATGGTATTGTTAATGCATGTGTTAGTATAGGACTATCGGACAAAGCACACAGCATTCTCGATGAAATGAATGCTCTGGTAGGCTCTGTGGGTCTCGGGGTCTATGTGCCAATCTTGAAGGCTTACTGCAAAGAAAATCGAACAGCTGAGGCTACTCTATTGGTGGCGGAGATTAGTGGTTCAGGTCTTCTGTTGGATGTGGAAACCTATGATTCTTTGATAGAAGCATCCATGTCCAGCCAAGATTTTCAGTCAGCCTTTTCAATGTTTAGGGACATGAGAGAGGCGAGGGTTCCTGACTTGAAAGGGAGTTACTTAACTATCATGACTGGTTTGATGGAGAATCATCGGCCTGAGTTGATGTCAGCTTTCTTAGACGAGGTGGCTGAGGATCCTCGGATCGAAGTTGGCACTCATGACTGGAATTCTATCATCCATGCTTTCTGTAAAGCCGGGAGACTAGAAGATGCAAGAAGAACTTTCAGACGGATGACATTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCCATGATTAATGGTTATGTCTCGGCAGGGAAATATTTTAGTGTGCTGATGTTGTGGAATGAGGTTAAGCGAAAGCTATCAGAAGAAGAGCAGAAGGGGGTCAAATTTGACCAAAATTTGGTTGATGCATTCCTATATGCTTTGGTCAAAGGAGGTTTCTTTGATGCAGTTATGCATGTTGTGGAGAAATCTAATCAAAAGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACACATAAAAAGCTCAGAGTGGCGAAGTTAAGAAAAAGAAATTTCAGAAAAATGGAAGCACTTATTGCTTTTAAGAATTGGGCTGGCTTAAATACATGA 1974 0.4063 MARKVLSFLPQRPFSSIPDIPNLYSFLQPSLFSLKTTNQQQQPQNQNQNLPTSPPNSFNQDQISTLETTLHKSIVTNNTDEAWKSFKSITTLHSFPPKPLTNSLITHLSSHSDLHNLKRAFTSAVYIMEKNPMMLELETVASLLESMRCANTAAPAFALVKCMFKNRFFVPFDTWGGVLAEISRKNGNLVAFLRVFEENCRICLDEKVESMKPDVDACNAALEGCCYELQSVSDAERVIEIMSNLGVRPNELSFGFLGYLYALKGFQDKIDELKKLMVGFGYSNKKNLYSNLISGYVKSGNLASVESTILSSLNDGDGKDWNFGEETFCGVVKEYLHRGNIKGLANLIIEAQKLEPSNIEVGQSVGYGIVNACVSIGLSDKAHSILDEMNALVGSVGLGVYVPILKAYCKENRTAEATLLVAEISGSGLLLDVETYDSLIEASMSSQDFQSAFSMFRDMREARVPDLKGSYLTIMTGLMENHRPELMSAFLDEVAEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSMINGYVSAGKYFSVLMLWNEVKRKLSEEEQKGVKFDQNLVDAFLYALVKGGFFDAVMHVVEKSNQKKIFVDKWRYKQAFMETHKKLRVAKLRKRNFRKMEALIAFKNWAGLNT* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0796 657 Pfam Pentatricopeptide repeat domain 420 464 IPR002885 -
Lan11g0796 657 Gene3D Tetratricopeptide repeat domain 466 623 IPR011990 GO:0005515
Lan11g0796 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Lan11g0796 657 TIGRFAM PPR: pentatricopeptide repeat domain 507 538 IPR002885 -
Lan11g0796 657 Gene3D Tetratricopeptide repeat domain 181 366 IPR011990 GO:0005515
Lan11g0796 657 PANTHER BNAC05G43320D PROTEIN 3 657 - -
Lan11g0796 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 249 IPR002885 -
Lan11g0796 657 PANTHER OS01G0788900 PROTEIN 3 657 - -
Lan11g0796 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Lan11g0796 657 MobiDBLite consensus disorder prediction 36 59 - -
Lan11g0796 657 Gene3D Tetratricopeptide repeat domain 395 465 IPR011990 GO:0005515
Lan11g0796 657 Pfam PPR repeat family 507 550 IPR002885 -
Lan11g0796 657 Pfam PPR repeat 289 306 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0796 Lan-Chr11 7527105 7529542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0796 380 568 Miscellaneous Gene Families AT4G11690 23.958 1.54e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0796 - - mtr:MTR_5g044930 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0796 11 7527105 7529542 Lan11g0796 11 7527105 7529542 ECH