Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0788 ATGGCGATGATGCAAGGAGTGCAGAAAAACACACTCTACGTTGGTGGTTTAGCCGAAGAGGTTAACGAGTCCATTCTACACGCCGCTTTCATACCCTTCGGTGACATTAAGGATGTCAAAACGCCACTGGACCAAGCCACCCAGAAGCACCGTTCATTTGGATTCGTTACTTTCTTGGAAAGAGAAGATGCTTCCGCCGCCATGGATAACATGGATGGCGCCGAGCTCTATGGGCGTGTACTCACCGTTAATTACGCCCTTCCTGAGAAAATCAAGGGTGGTGAACAGGGATGGGCTGCGCAACCAATTTGGGCGGATGCGGATACATGGTTTGAGCGGCAACAGCAAGAAGAGGAAATGCGTCGTATTGAAGCGGAGAACCGAGCTACAATGCAAGCTGCAGAAGAGTTGCACAGGAAAAAGGCAGCTGAAGAGCGAGAAGGAGAAAAGGAAGAGGATATTGAGATCAAGGATGATCCTATGGCAAAGGCTGAAGCTGAGGTTATACAGCAGAATTAA 519 0.4913 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRATMQAAEELHRKKAAEEREGEKEEDIEIKDDPMAKAEAEVIQQN* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0788 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Lan11g0788 172 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Lan11g0788 172 SMART rrm1_1 11 84 IPR000504 GO:0003723
Lan11g0788 172 PANTHER TRANSFORMER-2-RELATED 5 172 - -
Lan11g0788 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Lan11g0788 172 MobiDBLite consensus disorder prediction 133 172 - -
Lan11g0788 172 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Lan11g0788 172 Gene3D - 3 150 IPR012677 -
Lan11g0788 172 Coils Coil 113 154 - -
Lan11g0788 172 MobiDBLite consensus disorder prediction 133 164 - -
Lan11g0788 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0788 Lan-Chr11 7453799 7456718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0788 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.35e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0788 - - gmx:100809447 290.041