Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0780 ATGAACCACGAGGAGAAAGTCACCATGGACCTTATTTCACCTTCTGAGCATCTCTGCTATGTCCGTTGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATCCCATGCAAGAGGTTGCTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTATCCTTTCTCAGTACCAGACCTCCATATTCTCCTCAAACCCAAACCATTGATCACACACTGAGTCTCCAGGGGTTTTACAGTGATACCAAAAAGGGTCATGCATCATCTTCATCACCAACTACATCAAACGAGTCAGTTTCCCCTAAAGCAGCACCATTTGTTGTGAAACCACCTGAGAAGAAGCACCGTCTTCCATCTGCTTACAACCGTTTCATGAAAGATGAGATACAACGCATCAAAGCAGCTAACCCTGAGATCCCGCATCGTGAAGCTTTCAGCGCTGCTGCCAAAAATTGGGCTAGGTTTATTCCAAATTCACCAACCAGTGCAGTTTCAGCAACTAAAAATCATGAATGA 516 0.4554 MNHEEKVTMDLISPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPYSPQTQTIDHTLSLQGFYSDTKKGHASSSSPTTSNESVSPKAAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSAVSATKNHE* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0780 171 CDD HMGB-UBF_HMG-box 116 152 - -
Lan11g0780 171 Gene3D High mobility group box domain 80 159 IPR036910 -
Lan11g0780 171 PANTHER PROTEIN CRABS CLAW 6 169 - -
Lan11g0780 171 Pfam YABBY protein 14 155 IPR006780 GO:0007275
Lan11g0780 171 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0007275
Lan11g0780 171 MobiDBLite consensus disorder prediction 82 105 - -
Lan11g0780 171 MobiDBLite consensus disorder prediction 82 101 - -
Lan11g0780 171 SUPERFAMILY HMG-box 100 153 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0780 Lan-Chr11 7252661 7255221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0780 1 169 C2C2-YABBY Transcription Factor Family AT1G69180 67.052 6.77e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lan11g0780 YABBY 2.9e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0780 K25796 - gmx:100819079 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0780 11 7252661 7255221 Lan11g0780 11 7252661 7255221 ECH