Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0775 ATGGGTAGGGGAAAGGTGGTGCTGAAAAGGATTGAGAACAAGATAAATCGTCAAGTAACATTTGCAAAGAGAAGGAATGGGTTGTTGAAGAAGGCTTATGAACTTTCTATCCTCTGTGATGCTGAGGTTGCTCTCATTATCTTCTCCAACCGTGGCAAACTCTATGAGTTTTGCAGCAGCTCTAGCATGGGGAAGACACTTGAGAGGTATCACAGATGCAGTTATGAATCCTTGGAAGTACATAACCAACCTGCAATGGAGACACAGAAGCGATACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGAATTACAACGTACGCAGAGAAATTTCCTTGGGGAAGAATTGGAGCACTTAGATATCAAGGAGCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCATTAAAGCAAATCAGGTCTAACAAGACACAACATATGCTTGATCAACTGGCTGATCTGAAAACTAAGGAAGAAGTTCTACTGGAAACCAATAATATGCTGAGGAATCAGTGGGAGGAAATTAATATAGCCCTTCAACCAACATGGGAGCAAAATGCACCATACAACCGCCACCCTCCCACATCAGAGGGATACTATGAGACAGCACATTGCAATAGTACCTTGATAATTGGCAGTTCTGCAGCAACTAATAAAGCAGGAGGAGCTCCAGGAACCTCAGGCCAGAATACTAGTGAATTCATGCATGGATGGATGCACTGA 723 0.4315 MGRGKVVLKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSSSSMGKTLERYHRCSYESLEVHNQPAMETQKRYQEYLKLKSKVEELQRTQRNFLGEELEHLDIKELEQLERQLDSSLKQIRSNKTQHMLDQLADLKTKEEVLLETNNMLRNQWEEINIALQPTWEQNAPYNRHPPTSEGYYETAHCNSTLIIGSSAATNKAGGAPGTSGQNTSEFMHGWMH* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0775 240 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Lan11g0775 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0775 240 MobiDBLite consensus disorder prediction 217 240 - -
Lan11g0775 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan11g0775 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 Coils Coil 151 171 - -
Lan11g0775 240 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lan11g0775 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 PANTHER MADS BOX PROTEIN 1 217 - -
Lan11g0775 240 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0775 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 MobiDBLite consensus disorder prediction 217 234 - -
Lan11g0775 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 217 - -
Lan11g0775 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan11g0775 240 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0775 Lan-Chr11 7199051 7221312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0775 1 212 MADS-box Gene Family AT5G15800 63.964 6.75e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan11g0775 K-box 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0775 K09264 - gmx:100811049 396.741