Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0767 ATGAGAGCAGGGAAAGGGAACATGGAAGAGGACGAGTACGAAGAAGATGAATTCGGTTCTTCTAAGAAACAAGGCCATTCCTCTGCCCCTAACCCCAATAACACCAACAAAGATGCAAAAGCTGTTGATAAGGCTAGTGCAGTAAGATCAAAACATTCGGTAACTGAGCAGCGAAGAAGAAGCAAGATAAACGAGAGGTTCCAGATATTAAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACAGCGTCCTTCTTATTAGAGGTGATTGAATATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCCAGGTTGGAGTCCCGAGCCCTCAAAATTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAACTTTGTTGGGCAACCTCAAGCTGTAAAGAACGGTTCAGGTCCAGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAATACTAGTATCTCTCCAACCATGCCTTGTGGGAGTCACAATATGATAGATCCTGATCAGAGCCGGGATATTGCCAACAAAATAATAGAGAGGCAACCTGATTTGGCTAGCAAGGGACTACCTCTACCCATGGCTATGCACTCCAACATGTCAGTTCCTGTCAGAAGTGATGATTTACTTGCTCATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAATCGAATACCCAGCCACTAGTGAACCACAGACCCGGCAGGAAGAACTGACAGTTGAAGGAGGGACAATTAGCATCTCTAGTGTATACTCCCAAGGGTTGCTTAATAATCTGACTCAAGCACTACAGAGTGCTGGTATAGATCTATCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAGCGAGCAAATGAAGGACCGAGCTGTGGAACCTCCTCTCCCAAGAATCATGATAATATCCCTTCTAGCAATCAAGGAATTGCACATTTTAGAGATGCGGGCAGTACAGAAGACTCAGATCAAGCTCAAAAACGAATGAAAACAGCATTGAAGTGA 1020 0.4392 MRAGKGNMEEDEYEEDEFGSSKKQGHSSAPNPNNTNKDAKAVDKASAVRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPGWSPEPSKLMPWRNSHWRVQNFVGQPQAVKNGSGPVSPFPGKFDESNTSISPTMPCGSHNMIDPDQSRDIANKIIERQPDLASKGLPLPMAMHSNMSVPVRSDDLLAHPLQGTVSDAQSIEYPATSEPQTRQEELTVEGGTISISSVYSQGLLNNLTQALQSAGIDLSQASISVQINLGKRANEGPSCGTSSPKNHDNIPSSNQGIAHFRDAGSTEDSDQAQKRMKTALK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0767 339 MobiDBLite consensus disorder prediction 291 318 - -
Lan11g0767 339 CDD bHLH_AtBIM_like 46 122 - -
Lan11g0767 339 MobiDBLite consensus disorder prediction 42 60 - -
Lan11g0767 339 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 336 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lan11g0767 339 MobiDBLite consensus disorder prediction 1 60 - -
Lan11g0767 339 SMART finulus 53 103 IPR011598 GO:0046983
Lan11g0767 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 118 IPR036638 GO:0046983
Lan11g0767 339 MobiDBLite consensus disorder prediction 291 339 - -
Lan11g0767 339 Gene3D - 45 110 IPR036638 GO:0046983
Lan11g0767 339 PANTHER TRANSCRIPTION FACTOR BIM2 1 336 - -
Lan11g0767 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Lan11g0767 339 MobiDBLite consensus disorder prediction 23 40 - -
Lan11g0767 339 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0767 Lan-Chr11 7052453 7062438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0767 1 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 55.060 4.32e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0767 HLH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0767 - - lang:109361152 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0767 11 7052453 7062438 Lan11g0767 11 7052453 7062438 ECH
Lan11g0767 11 7052453 7062438 Lan9g0886 9 14913518 14918354 LSH