Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0742 ATGGAGAAAGATCAGAACTATTCGGCACCCATGCCTCCAAGTTTCAGCACACTTGACTACTCTCTTGATAATCACAACCATAATCATCTTTATCCACAACATCTCATGAAGTTTCAAATAGGCGAAAGTTCAGGCGGAAACGATAATGTTATTGTGGATTACATGCCTCAACAACCACCACCACCACCACAAATATCACCATCCGGGTTTTATGGTGCAGCTAGTTTTGATAAACTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTCGGACCGAAATTGGCCTTAAATCAAGCCAAGACTTGCGAAGAAACCGGAATTGATCCGGTTTACTTCCTCAAGTTTCCAGTCTTGAATGACAAAATGGAGGACAAAAATTTGATGGTGATCAACACAGAAGCTGGTGATGGAGAAGCACAAAATGATGATGAGAAATTCAACATGGTAAGCGTGGAAGGTAATGCAAGAGCTGGTGTAAGTGACGAAAAATGGGGAATAATTAGAGATGAAGAAACTCGAGTTTCTGATGACCACAACTCAGTGCAGATTCGGTATCTTGGCCATGAAGAACTCCAGAACAATAACTCTACAGTGCAGGAGAACAAGAACAAGAGGAAGAGGCCAAGAACCGTGAAAACAAGTGAAGAAGTTGAGAGTCAGCGCATGACTCACATAGCAGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCTTCTATAATCGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTTCTACAATGCTTGGAATCACAAAAGAGGAGAAGAATCCTCGGAGAAGATCAATCCAGACAAGTTGGTGATCCAGTTCTTGCAATACAACAACCTATTCAGCCACCATTTTGTCCACCTTTGCCTAATGACCATTTGAAGCTCGTTGAGTTAGAGACTGGACTTCACGAAGAAACCGCGAAGAGCAAGTCTTGTTTGGCTGATGTAGAAGTAAAGCTTCTTGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAATTGATCAAGACCATTGCTGCACTTGAAGATCTCCAACTAATTATCCTTCACACTAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCGAGGTGGCTAGTGATTCAAGGTTCAGCGCAGAAGATATAGCCAGCTCCGTTCAGCAGATATTCAGTTTTATCCATGCAAACACTAGCATGTGA 1278 0.4264 MEKDQNYSAPMPPSFSTLDYSLDNHNHNHLYPQHLMKFQIGESSGGNDNVIVDYMPQQPPPPPQISPSGFYGAASFDKLSFADVMQFADFGPKLALNQAKTCEETGIDPVYFLKFPVLNDKMEDKNLMVINTEAGDGEAQNDDEKFNMVSVEGNARAGVSDEKWGIIRDEETRVSDDHNSVQIRYLGHEELQNNNSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEDQSRQVGDPVLAIQQPIQPPFCPPLPNDHLKLVELETGLHEETAKSKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVEVASDSRFSAEDIASSVQQIFSFIHANTSM* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0742 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 285 IPR036638 GO:0046983
Lan11g0742 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 270 IPR011598 GO:0046983
Lan11g0742 425 CDD bHLH_AtFAMA_like 222 288 - -
Lan11g0742 425 Gene3D - 210 284 IPR036638 GO:0046983
Lan11g0742 425 PANTHER TRANSCRIPTION FACTOR FAMA 31 425 IPR044283 GO:0003700|GO:0010052
Lan11g0742 425 PANTHER TRANSCRIPTION FACTOR FAMA 31 425 - -
Lan11g0742 425 MobiDBLite consensus disorder prediction 190 215 - -
Lan11g0742 425 MobiDBLite consensus disorder prediction 200 215 - -
Lan11g0742 425 SMART finulus 225 276 IPR011598 GO:0046983
Lan11g0742 425 CDD ACT_UUR-ACR-like 351 415 - -
Lan11g0742 425 Pfam Helix-loop-helix DNA-binding domain 220 271 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0742 Lan-Chr11 6694113 6696615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0742 40 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.463 1.07e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0742 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0742 - - gmx:100793349 582.793