Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0735 ATGAAGGTTTTTGTGAAGACTCTGAAAGGAACGCACTTCGAAATTGAAGTGAATCCCTCAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCTGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAGGATGGTACTACCTTGGAGGAAAATAAAGTAGCCGAAAATACTTTTATTGTAATCATGCTATCAAAGACTACGAGCTCAACTGGTGAAGGATCTACTGCAACTGCTGCTTCAGTTAAGTCATTGCAATCTCCGCAGACAAGTGCAGCTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTGTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTACCCGTGCTCTTCGTGCTGCTTACAACAACCCCGAGAGGGCCATTGAATATTTGTATTCTGGCATACCCGAGCAAGCTGAAGCTCCACCTGTGGCCCAAGTGCCTGGAAGCACACAACCTGCAAATCCTCCAGCTGCTGCTCCTCAAGCAGCACAACCCGCACCTATTACTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAACATTGGTGCTGCTGGTCCTGGCTCTTTAGATTTTCTGCACAACAGTCAACAGTTCCAAGCCTTGAGAGCTATGATGCAGGCTAATCCACAATTATTGCAGCCTATGCTACAAGAACTGGGTAAACAAAATCCTGAACTTATGAGATCGACTCAAGCGCATCAAGAAGACTTCCTTTGCCTGATAAATCAACCTGGGGAGGGTGGTGGCGAGGGGAATATATCGGGACAGCTGGAAGGTGCCATGCCACAAGCAGTGACTGTCACCCCTGAGGAGCAGCAAGCAATTGAACGTCTTGAAGCAATGGGTTTCGGTCATGCAATCGTATTGGAGGTGTTCTACGCTTGTAACAAAAATGAGGAGCTGGCAGCCAACTACCTTTTAGATCACATTCATGAGTTTGATGATTAA 1017 0.4621 MKVFVKTLKGTHFEIEVNPSDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENTFIVIMLSKTTSSTGEGSTATAASVKSLQSPQTSAAAGSNLEGTIQQIVDMGGGSWDRDTVTRALRAAYNNPERAIEYLYSGIPEQAEAPPVAQVPGSTQPANPPAAAPQAAQPAPITSSGPNANPLDLFPQGLPNIGAAGPGSLDFLHNSQQFQALRAMMQANPQLLQPMLQELGKQNPELMRSTQAHQEDFLCLINQPGEGGGEGNISGQLEGAMPQAVTVTPEEQQAIERLEAMGFGHAIVLEVFYACNKNEELAANYLLDHIHEFDD* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0735 338 Pfam XPC-binding domain 212 268 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lan11g0735 338 SMART ubq_7 1 75 IPR000626 GO:0005515
Lan11g0735 338 PANTHER UV EXCISION REPAIR PROTEIN RAD23 103 337 - -
Lan11g0735 338 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 94 - -
Lan11g0735 338 SUPERFAMILY UBA-like 101 157 IPR009060 GO:0005515
Lan11g0735 338 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lan11g0735 338 Pfam UBA/TS-N domain 293 329 IPR015940 -
Lan11g0735 338 Pfam UBA/TS-N domain 111 146 IPR015940 -
Lan11g0735 338 Gene3D - 1 80 - -
Lan11g0735 338 MobiDBLite consensus disorder prediction 157 194 - -
Lan11g0735 338 SUPERFAMILY UBA-like 277 336 IPR009060 GO:0005515
Lan11g0735 338 SMART uba_6 108 148 IPR015940 -
Lan11g0735 338 SMART uba_6 294 331 IPR015940 -
Lan11g0735 338 TIGRFAM rad23: UV excision repair protein Rad23 87 336 IPR004806 GO:0006289
Lan11g0735 338 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Lan11g0735 338 CDD UBA1_Rad23_plant 103 151 - -
Lan11g0735 338 Gene3D - 103 151 - -
Lan11g0735 338 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Lan11g0735 338 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 106 149 IPR015940 -
Lan11g0735 338 Gene3D - 286 333 - -
Lan11g0735 338 SUPERFAMILY XPC-binding domain 209 272 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan11g0735 338 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 94 - -
Lan11g0735 338 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 103 337 - -
Lan11g0735 338 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lan11g0735 338 Gene3D - 204 268 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan11g0735 338 PRINTS DNA repair protein Rad23 signature 238 260 IPR004806 GO:0006289
Lan11g0735 338 PRINTS DNA repair protein Rad23 signature 288 304 IPR004806 GO:0006289
Lan11g0735 338 PRINTS DNA repair protein Rad23 signature 305 319 IPR004806 GO:0006289
Lan11g0735 338 PRINTS DNA repair protein Rad23 signature 320 335 IPR004806 GO:0006289
Lan11g0735 338 CDD Ubl_Rad23 1 74 - -
Lan11g0735 338 SMART CBM 208 253 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0735 Lan-Chr11 6508489 6515739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0735 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 1.64e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0735 K10839 - gmx:100809066 501.516