Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0713 ATGAAAAAGGAAGATCAAGGGCAATCTTCTTCTAAAGCTATCAACAACAACAATATTCAAAGCTATCAAGAGCAACTACTCCTTCAACAACAACAACAACAGATGCATAATCATCAACAAAGCAATGATATGAATAATATCTTTGTAGAAGGAGGAAGAGGGTTAATGTTCCCATCTGAAATTTCTCCATTGTCCATGCCACCGGTTCACTCCTTCAACCCGAACCTGGTTCGAGACCAAGACCATTTTCTTGTTCCTCCTTCGGTGCCTTCACCTTATGCAAACTTTATCAACAGAAGGGTTCCTTCTCTTCAGTTTGCATATCATGAGGGTTCTTCTGATCATCTTAGGATACTGTCTGATACACTTGGACCAATGGTTCAACCAGGTTCAGTTCCCTTTGGACTCCATGCTGAGTTGGGTAAGATGACTGCTCAAGAAATCATGGATGCTAAGGCTCTTGCACAGTCCAAGAGTCACAGTGAAGCTGAAAGGCGACGCAGAGAGAGAATCAATAACCATCTTGCCAAGCTTCGCAGCTTGTTGCCCAACACAACAAAAACAGATAAAGCTTCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACTTCATTGATAGCAGAAACAAGTCCAGTGCCTACCGAGTCTGATGAGTTAACAGTGGACACAGCTGAAGAGGAAGGTAAGTTTGTGATCAAAGCCTCACTATGCTGTGAAGATAGGTCAGATCTTTTACCTGAACTCATCAAGACGTTGAAAGCATTAAGGTTGAGAACCCTCAAAGCAGAAATCACAACCCTTGGTGGGAGAGTGAGGAATGTGCTTTTCATCACTGGAGATAATGAGGATTCAAGTAGCAGTGGAGAGCAATGCATGCAGCATCAACAACAGTATTGTATTAGTTCAATACAAGAAGCACTTAAGGCAGTAATGGAGAAGAATGGTGGGGATGAATCTGCTTCTGGGAATGTTAAGAGGCAAAGGACTAATAATATCAATATCCTTTAA 1023 0.4203 MKKEDQGQSSSKAINNNNIQSYQEQLLLQQQQQQMHNHQQSNDMNNIFVEGGRGLMFPSEISPLSMPPVHSFNPNLVRDQDHFLVPPSVPSPYANFINRRVPSLQFAYHEGSSDHLRILSDTLGPMVQPGSVPFGLHAELGKMTAQEIMDAKALAQSKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTESDELTVDTAEEEGKFVIKASLCCEDRSDLLPELIKTLKALRLRTLKAEITTLGGRVRNVLFITGDNEDSSSSGEQCMQHQQQYCISSIQEALKAVMEKNGGDESASGNVKRQRTNNINIL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0713 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 211 IPR036638 GO:0046983
Lan11g0713 340 Gene3D - 150 211 IPR036638 GO:0046983
Lan11g0713 340 MobiDBLite consensus disorder prediction 319 340 - -
Lan11g0713 340 MobiDBLite consensus disorder prediction 325 340 - -
Lan11g0713 340 CDD bHLH_AtAIG1_like 150 227 - -
Lan11g0713 340 SMART finulus 161 210 IPR011598 GO:0046983
Lan11g0713 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Lan11g0713 340 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Lan11g0713 340 PANTHER TRANSCRIPTION FACTOR BHLH30 69 340 IPR045847 GO:0003700|GO:0006355
Lan11g0713 340 PANTHER TRANSCRIPTION FACTOR BHLH30 69 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0713 Lan-Chr11 6269080 6272628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0713 10 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.746 2.42e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0713 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0713 - - qsu:112015145 442.195