Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0676 ATGGTTTTTATCAAGGCTCAGAAATCAAGGGCTTACTTCAAGAGGTACCAAGTCAAGTTCAAGAGAAGGAGAGATGGCAAGACTGATTACCGTGCTAGGATTCGGTTGATTAACCAGGACAAGAACAAGTACAACACCCCAAAATATCGCTTTGTGGTTCGATTTACCAACAAGGATATCATTGCACAAATAACATCTGCTAGCATCGCCGGTGATCATGTTCTTGCTGCTGCATATGCACATGAACTGCCACACTTTGGTCTCGAAGTAGGCCTTACAAACTATGCTGCAGCTTATTGCACTGGACTTCTTCTCGCCCGTAGGGTCCTTAAGACACTTGAATTGGATGAGGAGTATGAGGGGAATGTAGAGGCTACCGGAGAGGATTATTCAGTTGAACCTGCTGATACAAGGAGACCATTCCGTGCCCTCCTTGATGTTGGTCTTATCAGGACCACCACTGGAAATCGTGTTTTTGGCGCCCTTAAGGGAGCTTTGGATGGGGGTTTAGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTCGATAAGGAGAAGAAGGAACTCGACCCTGAGGTTCACCGCAAATATATCTTTGGCGGTCATGTTGCTAACTATATCAAGACCCTGATTGAAGATGAACCTGAGAAGTACCAAACACACTTCAGTGAATACATTAAGCGAGGAATAGAGGCTGATGGACTTGAGGCGCTGTACAAAAAGGTTCACGCAGCCATCCGTGCAGATCCCACTCCAAAGAAGTCTGACAAGCCGAAACCAAAGGAGCATAAGAGGTACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGAATAAGTTGATTGCACGATTGCAAGCTCTCAATTCCGCCGCTGAAGTTGATGATGAGGATGACGAGTGA 900 0.4567 MVFIKAQKSRAYFKRYQVKFKRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDHVLAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKTLELDEEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDPEVHRKYIFGGHVANYIKTLIEDEPEKYQTHFSEYIKRGIEADGLEALYKKVHAAIRADPTPKKSDKPKPKEHKRYNLKKLTYEERKNKLIARLQALNSAAEVDDEDDE* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0676 299 Coils Coil 270 290 - -
Lan11g0676 299 SUPERFAMILY Translational machinery components 11 251 - -
Lan11g0676 299 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 Gene3D - 1 291 - -
Lan11g0676 299 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 299 - -
Lan11g0676 299 MobiDBLite consensus disorder prediction 248 268 - -
Lan11g0676 299 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Lan11g0676 299 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan11g0676 299 CDD Ribosomal_L18_L5e 41 170 - -
Lan11g0676 299 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 299 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0676 Lan-Chr11 5692114 5694554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0676 1 291 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 83.505 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0676 K02932 - gmx:100817746 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0676 11 5692114 5694554 Lan9g0958 9 16101383 16104437 LSH
Lan11g0676 11 5692114 5694554 Lan2g0757 2 15978541 15981207 LSH