Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0656 ATGCCTACTAAGGTTCTCTTATCTCAACTTCGCACTTCTTTCACTTTCACCATGAACCCTCTTTCTTCACGCGCCACGCTTCCCATTTTCTCACCCATCTTATTCTCTTTCAACCTCAAACACCTTCCCCTCCAAAACGCACCGTTTCATCTTCGCCCATTATCCACCCACAGTAGCAGTGGTAGCAGAGGAAAGGTTCGTGCTTCCAAGAGTCTTATTGATGAAGAGTCTGAACTCAGTGGCTGGGTTAGCGAGTTAAGGACCGATTCCTACCGTGGTCGACTCACCAGTGATGATGATGATAATAGGGACTCTGTCAGAGGAAGAGGAAGTGGAATGGGAAGAGGAAGAGGCGGAGGAAGAGGAGGAGGAAGAGGAAGGGGTGGTAGTGGTGGCGGTGGTGGTGGTAGAATCGATGAGTCAACTCGGAGGGGAACTCGTGACTCGTTTGACTCTGGTAACCGAGGAAGGGGAACTCGTGACTCGTTTGACTCTGGTAACCGAGGAAGGGGGAGTGTAAGTGGAAGAGGACGTGGAAGAGGAAGGGATATGAGGGGTGAGTCAACTCGGAGGGAAACTCGTGACCCGCTTGACTCGTTCTCAAGGAGAAATTCAAGGGCTATTCAGAATTTTAATGGTGAGAAAGATGAATTCCGTTCTTCAAGGAATAATAATAATAATAGTGATAATAGGGAAGCTGTGTTTGGGAAGAGTAGTAGAAGAGGAGTGGAATTGAGGAACGCAACTAGAATGTCTTCTCAATCGAAGAGTGAGGAAGAGGATGAGGATGAAGATGATGATGAGGATGAGGTGGTAGATCGGTTCAATAGTCGTGGCTTCGATGAATTTCTCAGTGATGATGATGATGAGAGTGAAGGTAGTGAGGAAGATGATGAGATATTGAGTAAGAGCAAAACTGCTTTGTTTGGAAATGAGAAAACAACTCCAAGAGCTGCTTCATCTGGGGGTTCTGAGTCTTATTTGAGTGATACCAGATTCGACCAATGTTCAGTCTCCCCACTATCATTAAAAGCAGTAAAGGATGCTGGGTATGAGAAAATGACTGTTGTGCAGGCAGCAACTCTTCCAATTATACTCCAAGGTAAGGATGTTCTCGCCAAGGCTAGAACAGGCACCGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTTGCAAAATTACCGCCAAGTGATCGTGATCAAAGGCGACCACCAATTCATGTACTTGTCATATGCCCAACCAGAGAACTTGCAAGCCAAGCTGCTACAGAAGCCACTAAACTGCTGAAATACCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAGCAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTTGAGAATACTGCTGGTTTTGCAACTAGGCTAATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATCGAAAAGATAATTGCAGCAACCCCTAAACAACGACAAACACTTATGTTTTCTGCCACAGTCCCAGAAGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAATATATCAATACAGTTGAAGAGGGTAGTGAGGAGACACATTCAAAGGTTCACCAGACACATTTAGTTGCTACATTAGACAAGCATTTCTCTTTTCTCTATACTCTTCTGAAGGAGCACATTGCAGATGATGTTGAATATAAGGTTCTTGTTTTCTGCACGACTGCTATGGTCACAAGACTTGTTGCTGAACTTCTTGCTGAGTTGAAGTTGAATGTGAGAGAAATCCATTCGAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAGTTTCGGAAGTCAAAGGGTATCATTTTAGTTACTTCCGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGCTTGGTATACCAGCTGATAGGGAACAGTATATACATCGACTGGGAAGAACAGGGCGAAAAGGTAAAGAAGGACAGGGCATATTGCTACTGGCTCCTTGGGAAGAGTTCTTTCTATCTACTGCAAAAGATTTACCAATTGAGAAAGCTGCAGTACCTTCAGTTGATCCCGAAACTACGAAAAAGGTGGAAAAAGCTCTAGCTCATGTAGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAATAGGGAAAGACAAGTATAGGCTAGTGGAGCTTGCTAATGAGTTCAGTAGAAGCATGGGACTTGATAACCCTCCTGCTATTCCTAAGCTTGTTCTTGGAAAGATGGGACTTAGAAATATCCCAGGTTTACGTACCAAATAG 2400 0.4421 MPTKVLLSQLRTSFTFTMNPLSSRATLPIFSPILFSFNLKHLPLQNAPFHLRPLSTHSSSGSRGKVRASKSLIDEESELSGWVSELRTDSYRGRLTSDDDDNRDSVRGRGSGMGRGRGGGRGGGRGRGGSGGGGGGRIDESTRRGTRDSFDSGNRGRGTRDSFDSGNRGRGSVSGRGRGRGRDMRGESTRRETRDPLDSFSRRNSRAIQNFNGEKDEFRSSRNNNNNSDNREAVFGKSSRRGVELRNATRMSSQSKSEEEDEDEDDDEDEVVDRFNSRGFDEFLSDDDDESEGSEEDDEILSKSKTALFGNEKTTPRAASSGGSESYLSDTRFDQCSVSPLSLKAVKDAGYEKMTVVQAATLPIILQGKDVLAKARTGTGKTVAFLLPSIEAVAKLPPSDRDQRRPPIHVLVICPTRELASQAATEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAATPKQRQTLMFSATVPEEVRQVCHIALRRDHEYINTVEEGSEETHSKVHQTHLVATLDKHFSFLYTLLKEHIADDVEYKVLVFCTTAMVTRLVAELLAELKLNVREIHSRKPQSYRTRVSEEFRKSKGIILVTSDVSARGVDYPDVTLVIQLGIPADREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTAKDLPIEKAAVPSVDPETTKKVEKALAHVEMKNKEAAYQAWLGYYNSNKKIGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRTK* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0656 799 MobiDBLite consensus disorder prediction 307 329 - -
Lan11g0656 799 PANTHER RNA HELICASE 37 147 - -
Lan11g0656 799 PANTHER RNA HELICASE 305 797 - -
Lan11g0656 799 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 331 359 IPR014014 GO:0003724
Lan11g0656 799 MobiDBLite consensus disorder prediction 283 297 - -
Lan11g0656 799 SMART helicmild6 603 684 IPR001650 -
Lan11g0656 799 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 305 797 - -
Lan11g0656 799 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 37 147 - -
Lan11g0656 799 MobiDBLite consensus disorder prediction 140 164 - -
Lan11g0656 799 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 579 730 IPR001650 -
Lan11g0656 799 CDD SF2_C_DEAD 560 693 - -
Lan11g0656 799 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 545 IPR014001 -
Lan11g0656 799 Pfam Helicase conserved C-terminal domain 576 684 IPR001650 -
Lan11g0656 799 Pfam DEAD/DEAH box helicase 356 533 IPR011545 GO:0003676|GO:0005524
Lan11g0656 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 699 IPR027417 -
Lan11g0656 799 Gene3D - 554 778 IPR027417 -
Lan11g0656 799 MobiDBLite consensus disorder prediction 176 201 - -
Lan11g0656 799 CDD DEADc_MSS116 338 547 - -
Lan11g0656 799 MobiDBLite consensus disorder prediction 92 110 - -
Lan11g0656 799 Gene3D - 284 546 IPR027417 -
Lan11g0656 799 SMART ultradead3 350 563 IPR014001 -
Lan11g0656 799 MobiDBLite consensus disorder prediction 92 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0656 Lan-Chr11 5466757 5482337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0656 331 712 Eukaryotic Initiation Factors Gene Family AT3G19760 29.293 1.99e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0656 - - gmx:100799999 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0656 11 5466757 5482337 Lan2g0745 2 15803977 15808306 LSH