Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0654 ATGGCCACCTTTAAGATCATTTTTCCCTTCTTCATCTTTCCTGTCATATATGCTTCACATGATTACCCATCCTCTGTGTGTGGCGACAATGGGATCCTTATTCGTTTCCCTTTTCAACTAGAAGGTGACCAAAATCCTTATTGTGGTTATCCGGGCTTCAAATTAAGTTGTACCAATGAGAACAAAACAGTTCTAAAACTTCCTTACTCGGGAGAATTCTATGTACATGACATAAACTATCTCGAACAACAAATACAAGTCATCGATCCTGATGAATGCCTTCCCAAACGTATTCTAAGTCTCAATTTTTCAGGTTCTCCCTTCACTGCTATTTTTCATCGAAACTACAGCTTCTTAAGCTGTCCATATCAAAACGCAGGGTCACAGTTCATTCCCATTGAGTGCCTTAGCAATTCTACAAATTTTATATCAGCTATTCCTTCAGTGAAGTTGGCCGATTCATTGCCCGAGTCTTGTTATGTTAGTAGAAGTCTTTCAGTTCCAGTTGCAAGGTCAGGACTGCTTGAGGAAACTCTCACATTAACATGGGATAAGCCTGACTGCACAAATTGTGAGTTTCAAGAGCTAATGTGTGGATTTGAGAGCAATAATAGCAGTCAAGTTCTTTGTTTCCCTAACCACCGAACAGGCAAATCACAACGTGTACTAGTAACATTGAGAACCATCACATTAACCATAGTAGGACCAGCTGCATTATGTGTTATTGTGATAGTATGCTGCATGAGCTACAAGGACAGAATAGCCAATGCTGCATTACAGAGTTCTGCACAAGCTGCAATAGTACCACATCATGCTGCTAATGCTGGTTCTACGGGTCTGGATGAATCTATCATTGAATCTTATGAGAAGCTAGTACTTGGGGAGAGTCGACGAGTGCCGGGGCCGAATGATGTATCATGCTGGATATGCTTGTCAGAGTATAATAGCAAAGATATAATCAGATGCATTCCTGAATGTAAACATTGTTTTCATGTTGAATGCATTGATAAGTGGCTTCACATGAACACTACATGCCCAGTTTGCCGCAACCCTCCCTCTCCTTCTATTGTTCATGTTATAACCAGTGACCCTTGA 1095 0.4082 MATFKIIFPFFIFPVIYASHDYPSSVCGDNGILIRFPFQLEGDQNPYCGYPGFKLSCTNENKTVLKLPYSGEFYVHDINYLEQQIQVIDPDECLPKRILSLNFSGSPFTAIFHRNYSFLSCPYQNAGSQFIPIECLSNSTNFISAIPSVKLADSLPESCYVSRSLSVPVARSGLLEETLTLTWDKPDCTNCEFQELMCGFESNNSSQVLCFPNHRTGKSQRVLVTLRTITLTIVGPAALCVIVIVCCMSYKDRIANAALQSSAQAAIVPHHAANAGSTGLDESIIESYEKLVLGESRRVPGPNDVSCWICLSEYNSKDIIRCIPECKHCFHVECIDKWLHMNTTCPVCRNPPSPSIVHVITSDP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0654 364 Pfam Ring finger domain 306 349 IPR001841 -
Lan11g0654 364 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 359 - -
Lan11g0654 364 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 359 - -
Lan11g0654 364 Pfam Wall-associated receptor kinase galacturonan-binding 25 89 IPR025287 GO:0030247
Lan11g0654 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 353 IPR013083 -
Lan11g0654 364 ProSiteProfiles Zinc finger RING-type profile. 307 349 IPR001841 -
Lan11g0654 364 SUPERFAMILY RING/U-box 299 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0654 Lan-Chr11 5444058 5446955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0654 17 355 C3H Transcription Factor Family AT2G46495 44.476 1.67e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0654 - - aprc:113851081 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1247 16 20492385 20494430 Lan11g0654 11 5444058 5446955 PCT
Lan11g0654 11 5444058 5446955 Lan16g1247 16 20492385 20494430 PCT