Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan11g0652 | ATGATATTTAATCGGACAAGGACAATTGAAATGCCAAAATTGAAACGTTGTGATCTGGAGGGGGCGAACTGTGAAGGGCGTGAATCTTCAGCGATTCAGAAGAAGCGTAAGGGGAATGGGTTTTACTCTTTAGTTAAGCCATGTGATTCTGAGGATTTCAGTAGCAGTTCTGGCTCTTGGTGCAGTGAAGGGTCCTATTGGGATGGTAGTGGTAGTGGTGCTGAGGTTCAGTCCAATTCAAACTCAATTTTGAAGCAGTTCCATGATAAAACAGCTACTCGACCTCCATTGCTGCGGTCTTCGCGTGGCCGTGTTCAGACGCTGCCGTCAAGGTTCAGTGACTCGGTTCTTGATACGTGGAAGGATCAAGGAAATCAAATGGAGGACAGAGATTACAGCTATGAAGATGGTAATAACAAGAGTTTAGCGGAAGATAGGGTGAGTATTAGTGACTGGGATAACTATGGTTTGAAAAATTATCAATGTTGTTCTGGAGTGAAGGTTAGAATGGAAATAGATGATGAAAGGGAGCATGCTGATTCGTCTAGTATCGGTAAAAAGAGTAATACATCTGTACTTAGTTTTGAGGCTGTTGATCAAGCCCCTAATGTGAAAGTTGGAAAGGGGAAAGAGATTTACAAACCAGAGGATTTTGCATTAGGTGATGTGATTTGGGCGAAATGTGGGAAGAGATATCCGGCCTGGCCTGCTGTAGTGATTGATCCTCTCTCACAGGCTCCCAAATCCGTGCTCAGCTGTTGTGTTCCTGGTGCACTTTGTGTCATGTTTTTCGGTTATTCGAAAAATGGAAAGCGAAGGGATTATGCGTGGGTAAAGCAGGGAATGATGTTCCCATTCTTGAAATTCATGGACAGATTTCAGGGGCAGACCCAGTTGTACAAGAGTAAACCAAGTGATTTTCGAATGGCATTGGAGGAGGCAATGTTGGCACAAGATGGCCTTCTGGACTCACAATTGGGAGTAGAGGAAGTAACTAATGTAAAAGTTCATTCAGGTGGACTTAAACAGGCCACGGGTTCATATTTTGATCATGAATGTTACTACCAGGGTCAGGGTGCAAGATCTTGTGCTGGCTGTGGTTTGATGTCACCATGCAAAACAATGAAGAAGCTTAAGGATTCAAGTTGTGAACCTCAATTTTATTGCAAACATTGTGCAAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGATATGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAACGTCTGGGTGCATGCTGAATGTGCAAAAATTTCCAGCAAACTTTTCAAGGATTTGGAAAATACAGATTACTATTGCCCAGATTGCAAGGGAAAAATCAAACATGAATCACCGGTACCGCAGACATATAAGTCAGAAATCAAATCAATAAAGAGTTGTCAAAAATCTGTGATACCTGAGAAGGTAATGGTGGTGTGCAATGGCATGGAAGGAACTTACATCCCAAAACTTCATTTGGTTATGTGCAACTGTGGCTCTTGTGGTTCACGGAAGCAGACACTGAGCGAATGGGAAAAGCATACAGGTTGCAGAGCCAAAAAATGGAAGAATAGTGTGAAATTAAAAAGCACAATGCTACCACTTGAAAAATGGATCACAGAACACATTTCACAAGATGGAGTTCCCCCCTTGCAGCTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGACAACAAAATGATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGGTTTTGCTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTCTGCCCAGTTAAAGGTGGTGCTTTAAAGCCAACTGATGTTGAGATGCTATGGGTTCATGTTACTTGTGCTTGGTTTAAACCCGAGGTTGTTTTCCAAAACCATGAGACCATGGAACCTGCCTTAGGAATCCTTAGAATTCCTCCAAATACCTTTGTCAAGACTTGCGTGATCTGTAAACAAAGCCATGGTTCCTGTGCAAGTTGTGTCAAGTGTGCTACTCATTTTCATGTGATATGTGCTGCAAGAGCAGGATATAGCATGGAATTGCATTCAATGGAAAAGAATGGGAGTCAAATAATAAAGAAGCTAATATACTGTGCAGTTCACAGACTCCCAAATCCAGATTCAGTACTGGTTATGCATACACCCATGGGGGTTTTCTCTCCCAGGACTTCATTTCAAAATCACAAGGGATGCTTAAGGGGATCAAGGCTGGTTTCATCAAAGAATGCTGACCTTAATGAATTTCCAATCTCTGAAAGTGAATTGGTTGAGGAACTGTCCACTGCCCGATGTCGTGTGTACCGAAGGTCTCCTAATAAGAGGGCTAATGTGCCAATAATTCACTTGCTGAGGGGACCCAGTCTTCATTCTTTAAGTGCTGTAATTCAATTGAACGACTATAAGAGGGATGAAGATTCAGAAGTATTTACTTTCAAAGAACGTCTTCACCATTTACAGAAGAAGGAAAAGCGTATCATTTGCTTTGGAAAATCCGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGAGATGGTTGTTGAATATCGTGGTGAGCAGGTTAGGCGTAGTGTTGCTGATATGAGGGAAGCAAAATACCGTTTAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGCGAGGAAGTGGTAATCGACGCAACTCACAAGGGCAACATTGCACGCTTGATAAACCATTCTTGCATGCCAAACTGCTATGCTAGGATCGTGACTTTGGGTGATCGGGAGAGCCGGATTGTTCTGATTGCCAAGATTAATGTTTCTGCTGGGGAAGAACTCACGTATGATTATTTGTTTGATCCAGATGAGCGTGATGAATTGAAGGTCCCCTGCCTTTGCAATGCTCCTAATTGTAAAAAGTTTATGAACTAG | 3054 | 0.424 | MIFNRTRTIEMPKLKRCDLEGANCEGRESSAIQKKRKGNGFYSLVKPCDSEDFSSSSGSWCSEGSYWDGSGSGAEVQSNSNSILKQFHDKTATRPPLLRSSRGRVQTLPSRFSDSVLDTWKDQGNQMEDRDYSYEDGNNKSLAEDRVSISDWDNYGLKNYQCCSGVKVRMEIDDEREHADSSSIGKKSNTSVLSFEAVDQAPNVKVGKGKEIYKPEDFALGDVIWAKCGKRYPAWPAVVIDPLSQAPKSVLSCCVPGALCVMFFGYSKNGKRRDYAWVKQGMMFPFLKFMDRFQGQTQLYKSKPSDFRMALEEAMLAQDGLLDSQLGVEEVTNVKVHSGGLKQATGSYFDHECYYQGQGARSCAGCGLMSPCKTMKKLKDSSCEPQFYCKHCAKLRKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECAKISSKLFKDLENTDYYCPDCKGKIKHESPVPQTYKSEIKSIKSCQKSVIPEKVMVVCNGMEGTYIPKLHLVMCNCGSCGSRKQTLSEWEKHTGCRAKKWKNSVKLKSTMLPLEKWITEHISQDGVPPLQLDQQQVLAFLQEKYEPVHAKWTTERCAICRWVEDWEDNKMIICNRCQIAVHQECYGAKNVQGFASWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFKPEVVFQNHETMEPALGILRIPPNTFVKTCVICKQSHGSCASCVKCATHFHVICAARAGYSMELHSMEKNGSQIIKKLIYCAVHRLPNPDSVLVMHTPMGVFSPRTSFQNHKGCLRGSRLVSSKNADLNEFPISESELVEELSTARCRVYRRSPNKRANVPIIHLLRGPSLHSLSAVIQLNDYKRDEDSEVFTFKERLHHLQKKEKRIICFGKSGIHGWGLFARRDIQEGEMVVEYRGEQVRRSVADMREAKYRLEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIVTLGDRESRIVLIAKINVSAGEELTYDYLFDPDERDELKVPCLCNAPNCKKFMN* | 1018 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan11g0652 | 1017 | Gene3D | - | 213 | 320 | - | - | |
| Lan11g0652 | 1017 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 1017 | - | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | Zinc finger PHD-type profile. | 399 | 455 | IPR019787 | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | PWWP domain profile. | 220 | 289 | IPR000313 | - | |
| Lan11g0652 | 1017 | SMART | PostSET_3 | 1001 | 1017 | IPR003616 | - | |
| Lan11g0652 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 584 | 649 | IPR011011 | - | |
| Lan11g0652 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 400 | 457 | IPR011011 | - | |
| Lan11g0652 | 1017 | Pfam | PHD-zinc-finger like domain | 640 | 752 | - | - | |
| Lan11g0652 | 1017 | SMART | PHD_3 | 697 | 753 | IPR001965 | - | |
| Lan11g0652 | 1017 | SMART | PHD_3 | 401 | 453 | IPR001965 | - | |
| Lan11g0652 | 1017 | SMART | PHD_3 | 586 | 633 | IPR001965 | - | |
| Lan11g0652 | 1017 | Pfam | SET domain | 886 | 991 | IPR001214 | GO:0005515 | |
| Lan11g0652 | 1017 | SUPERFAMILY | Tudor/PWWP/MBT | 211 | 322 | - | - | |
| Lan11g0652 | 1017 | Gene3D | SET domain | 854 | 1017 | IPR046341 | - | |
| Lan11g0652 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 581 | 635 | IPR013083 | - | |
| Lan11g0652 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 636 | 754 | IPR013083 | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | Post-SET domain profile. | 1001 | 1017 | IPR003616 | - | |
| Lan11g0652 | 1017 | SMART | PWWP_4 | 218 | 287 | IPR000313 | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 1017 | IPR025780 | - | |
| Lan11g0652 | 1017 | CDD | PHD_TCF19_like | 402 | 452 | - | - | |
| Lan11g0652 | 1017 | PANTHER | PHD FINGER PROTEINS | 1 | 1017 | - | - | |
| Lan11g0652 | 1017 | SUPERFAMILY | SET domain | 868 | 1013 | IPR046341 | - | |
| Lan11g0652 | 1017 | Pfam | PWWP domain | 221 | 316 | IPR000313 | - | |
| Lan11g0652 | 1017 | ProSitePatterns | Zinc finger PHD-type signature. | 587 | 632 | IPR019786 | - | |
| Lan11g0652 | 1017 | Pfam | PHD-finger | 401 | 454 | IPR019787 | - | |
| Lan11g0652 | 1017 | SMART | set_7 | 875 | 998 | IPR001214 | GO:0005515 | |
| Lan11g0652 | 1017 | CDD | PHD_ATX3_4_5_like | 586 | 632 | IPR042011 | - | |
| Lan11g0652 | 1017 | CDD | SET_SETD1-like | 864 | 1013 | - | - | |
| Lan11g0652 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 393 | 460 | IPR013083 | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | SET domain profile. | 875 | 992 | IPR001214 | GO:0005515 | |
| Lan11g0652 | 1017 | Pfam | PHD-finger | 599 | 633 | - | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | Zinc finger PHD-type profile. | 584 | 635 | IPR019787 | - | |
| Lan11g0652 | 1017 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 638 | 753 | IPR034732 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan11g0652 | Lan-Chr11 | 5430430 | 5438405 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan11g0652 | 587 | 743 | C2H2 Transcription Factor Family | AT3G14740 | 31.707 | 1.57e-20 | 92.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Lan11g0652 | zf-HC5HC2H_2 | 4.6e-28 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan11g0652 | - | - | gmx:100793624 | 1555.42 |