Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0651 ATGTTTCACTCTCCAACAAGCCAAGCTGGTGAAAAGTTCAGACCCTGCTCACCTTCCTGTATTACTTCTATGAGCAAGGGCATTGGCAATGAAAACCAAATTATGTCACCAATAACATGTGAGATTTGCATTGAGCCCTTACCTATTGACAAGGTTTTCAACAACAACAACCAATGTTTGCACCCCTTTTGCTTGGATTGCATAGCTAAATACATAGAAGCAAAGGTGGAAGATAACACAGGGAATATCCCATGCCCTGCCTTGAACTGCAAGCAATTGCTAGATCCATTGTTTTGCAGGTCAATCATCTCCAAAGAATTGTTTGAAAAATGGTGTGAAATTCTCTGCACTTCCACAGTTTTAAACCTCGAAAATCGATCTTATTGCCCGAATCAACATTGCTCAGCTTTGGTTATCAATGAATGCAAAGACAATGCCAAGAAAGTGAAGTGTCCCAATTGCAAGAACTTTTTCTGCTTCAAATGCCAGATTCCTTGGCATGCTGGGTATAGGTGTGAAGAGAGTGGAGAAGTGAATCTAAGAGATGGGAATGATGTTCTATTTGGAGAACTAGTGGAAATAAAAAAATGGTGTAGATGCTATAAATGTGGTCACTGTGTTGAGCGTACTGGAGGCTGCAGATTGGTTCAGTGCAGATGCAAGGCCTTATGTTGCTATGAATGTGGAGAGAAGGGTCACTGGGGTCCTTGCAATCAAGTTGGAGATGGTACTGGTGCTCTACCAACTCGGTGTCGACTCGTATTATGTATCTTTATCTTTTTGGGGTTCATTCCCTTATTTTTAACTTCACTTATTTTGGCAGGGTTTTAG 831 0.4116 MFHSPTSQAGEKFRPCSPSCITSMSKGIGNENQIMSPITCEICIEPLPIDKVFNNNNQCLHPFCLDCIAKYIEAKVEDNTGNIPCPALNCKQLLDPLFCRSIISKELFEKWCEILCTSTVLNLENRSYCPNQHCSALVINECKDNAKKVKCPNCKNFFCFKCQIPWHAGYRCEESGEVNLRDGNDVLFGELVEIKKWCRCYKCGHCVERTGGCRLVQCRCKALCCYECGEKGHWGPCNQVGDGTGALPTRCRLVLCIFIFLGFIPLFLTSLILAGF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0651 276 ProSiteProfiles Zinc finger RING-type profile. 40 89 IPR001841 -
Lan11g0651 276 Pfam IBR domain, a half RING-finger domain 109 172 IPR002867 -
Lan11g0651 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 123 IPR013083 -
Lan11g0651 276 SUPERFAMILY RING/U-box 37 118 - -
Lan11g0651 276 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Lan11g0651 276 SMART ibrneu5 109 172 IPR002867 -
Lan11g0651 276 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 229 IPR031127 GO:0004842|GO:0016567
Lan11g0651 276 Pfam Zinc finger, C3HC4 type (RING finger) 40 86 IPR018957 GO:0046872
Lan11g0651 276 ProSiteProfiles TRIAD supradomain profile. 36 250 IPR044066 -
Lan11g0651 276 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 229 - -
Lan11g0651 276 SUPERFAMILY RING/U-box 185 240 - -
Lan11g0651 276 SUPERFAMILY RING/U-box 109 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0651 Lan-Chr11 5427418 5429349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0651 59 229 C3H Transcription Factor Family AT2G19610 28.415 3.67e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0651 K11975 - pop:18100148 270.781