Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0644 ATGAAGATTGAGATGGGTCTAGGAGGTGTTGGGATATGGAATGATGAAGAAAAATCCATGGTGGCTAAGGTTCTAGGCACTCATGCTTTTGACTATTTGTTTAGCAACTCTTTTTCAAATGAGAATCTGTTAATGACAATAGGGGGTGGTGAGAATCTGCAGAACAAGCTCTCAGATCTTGTTGAACGACCCAACGAGTCAAATTTCAGCTGGAACTATGCAGTTTTCTGGCAACTTTCACAGTCCAAATATGGAGACTTGGTTCTTGGTTGGGGTGATGGGTGTTGCAGGGAACCAAGGGAGGGTGAAAGCGGCGGCGATGGCCGCGGAGTTAGAGGGATTTTGAGCCTTGGCATGAATGATGAGATGCAACAGAAGATGAGGAAGAGGGTGCTTCAGAAGTTGCACACAACTTTTGGTGATTCAGATGATGAGGATAACTATGCTTTCGGATTAGACCGTGTTACTGACACAGAAATGTTCTTTCTTGCATCCATGTATTTCTCTTTCCCTCGTGGACATGGTGGTCCAGGTAAGTGCTTTGCTTCTGGGAAGCACTTGTGGCTCAATGATGTGATGAAATCTAGTTCTTATGATTATTGTGTGAGATCTTTCCTTGCTAAATCAGCTGGAATTCATACTGTTGTTTTGGTACCTACTGATTTGGGTGTGGTGGAGTTGGGTTCTATGAAGATGGTTAGGGAGAACTTTGATTTGTTGCATGCTGTGAAATCTGTGTTTTCAGCCCAATCATCATTTCCTAGGGTTAATAAGCCAGTTTCACCTGTTAATGTGGTGAACAATGAGAAAAGAGATGAGAATGCCCTTTTTCCTGGTTTAGCACTTGAGGAAGGTAACAATAAGAATAGTGCTAATAAAGTAGAGGCAAATGGAGCTTCAAAGATTTTTGGGCAGGATTTGAACTCTTTGAATAAGGGTCGTAGTACTCATTTTCGGGAGAAGCTTGCTGTTCGGAAAATGGAGGAGAGGCCTCCATGGAGAGGTCACCCCAATGGGAATAGCAGCATTGGCTTTCCGAATGCTCAAAATGGTATTCATGGTTCTAGTTGGGGAGTTAGTAGTCAAGGTGTGAGGCCGCCGCCTAGCCCCGTGGAAATCTTTGCTCCCAAATCTTCCACAAGCAATGTACCGATGCTGGCAAATGGCGCAAGACATGATTTCTTGCTAAAAAACTATCATCAGCTGCAACGACCAGGGCAAATGCAAATTGATTTTTCAGGTGCTACTTCAAGACCTGCCGTGATTGCTGAATCTGAGCTTTCTGATATCGAGGCTTCATGCAAGGAGGACAACTCGAGTGCAGTTGATGAGAAGAGGCCTAGAAAGCGGGGGAGGAAGCCTGCCAATGGAAGGGAAGAACCCCTAAATCACGTGGAAGCTGAGAGACAAAGGCGTGAGAAGCTGAACCAGCGATTCTACGCCTTAAGAGCAGTCGTGCCAAATATCTCCAAGATGGATAAGGCATCTCTTTTGGGAGATGCTATTGCTTACATCAACGAGCTGCAAGCAAAACTGAAGATTATGGAGTCTCAAAGAGGAGGAGATAGGTTCGGAAGCACATCTAGGGATAAATCAGTATCAGAGGTGGCCAACTCAAAAGCAGAAACTCCTTTTGTGGATATTGAAGCTGTTCAAGATGGGATCATTGTAAAGGTGAGCTGCTCTATTCATGCTCACCCGATATCAAAAGTAATACAGGCATTCAAAGAAGCCGAAATCAGCGTTGTAGAGTCAAAACTTGCTGCTGCAAATGATACTGTCTTGCACACCTTCATGATCAAGTCCCAAAGACCCGATCAGCTTACAAAGGAGAAGTTAATTGCAGCATTTTCTCGCGAATCCAGCTCCTTACAGACATTACCATCTGTTAGTTAG 1896 0.443 MKIEMGLGGVGIWNDEEKSMVAKVLGTHAFDYLFSNSFSNENLLMTIGGGENLQNKLSDLVERPNESNFSWNYAVFWQLSQSKYGDLVLGWGDGCCREPREGESGGDGRGVRGILSLGMNDEMQQKMRKRVLQKLHTTFGDSDDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLNDVMKSSSYDYCVRSFLAKSAGIHTVVLVPTDLGVVELGSMKMVRENFDLLHAVKSVFSAQSSFPRVNKPVSPVNVVNNEKRDENALFPGLALEEGNNKNSANKVEANGASKIFGQDLNSLNKGRSTHFREKLAVRKMEERPPWRGHPNGNSSIGFPNAQNGIHGSSWGVSSQGVRPPPSPVEIFAPKSSTSNVPMLANGARHDFLLKNYHQLQRPGQMQIDFSGATSRPAVIAESELSDIEASCKEDNSSAVDEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESQRGGDRFGSTSRDKSVSEVANSKAETPFVDIEAVQDGIIVKVSCSIHAHPISKVIQAFKEAEISVVESKLAAANDTVLHTFMIKSQRPDQLTKEKLIAAFSRESSSLQTLPSVS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0644 631 MobiDBLite consensus disorder prediction 330 371 - -
Lan11g0644 631 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Lan11g0644 631 Gene3D - 452 520 IPR036638 GO:0046983
Lan11g0644 631 SMART finulus 465 514 IPR011598 GO:0046983
Lan11g0644 631 PANTHER MYC 1 622 IPR045084 GO:0003700|GO:0006355
Lan11g0644 631 MobiDBLite consensus disorder prediction 340 363 - -
Lan11g0644 631 MobiDBLite consensus disorder prediction 432 470 - -
Lan11g0644 631 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 247 IPR025610 -
Lan11g0644 631 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 520 IPR036638 GO:0046983
Lan11g0644 631 CDD bHLH_AtAIB_like 456 519 - -
Lan11g0644 631 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Lan11g0644 631 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0644 Lan-Chr11 5369475 5372531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0644 5 622 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.923 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0644 bHLH-MYC_N 4.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0644 - - lang:109336709 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0644 11 5369475 5372531 Lan11g0644 11 5369475 5372531 ECH
Lan11g0644 11 5369475 5372531 Lan2g0738 2 15637191 15642337 LSH
Lan4g0796 4 9984300 9986535 Lan11g0644 11 5369475 5372531 PCT
Lan11g0644 11 5369475 5372531 Lan4g0796 4 9984300 9986535 PCT