Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0643 ATGGAGCAACAACAACAACCACTAAACGCCGCCACCGACGACGACGTAACAACCACCACCACAACAAAACCAGACAACTCCAGCGGCGGTGGCACACGCCATCCAGTCTACCGCGGCGTCCGTAAGCGGCGTTGGGGGAAATGGGTATCCGAAATTCGGGAACCACGCAAGAAATCACGCATATGGCTTGGGTCCTTCCCGGAGCCGGAGATGGCGGCGAAAGCCTATGACGTCGCTGCATACTGTCTTAAAGGCCGGAAGGCACAGCTCAACTTCCCCGACGAGGTGCACCACCTGCCGCCTTTGCCGCCGGCGTCTGCATGCACCGCGAGGGACATCCAAGCGGCGGCAGCAAAGGCGGCCCACATGATGATAAAGGCTGCCGGTTCTTCGGAGAAGAGTGGCATTGCTTCTTCTTCAGACGGTAACGGAGATGGCGGCGGCATCGATGATTTTTGGGGTGAGATAGAGTTGCCGGAGCTAATGAATAGTAAGTGGTGGACTTTTTCCGGTGACATCACGGCGTGCCTATAG 534 0.5749 MEQQQQPLNAATDDDVTTTTTTKPDNSSGGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPEPEMAAKAYDVAAYCLKGRKAQLNFPDEVHHLPPLPPASACTARDIQAAAAKAAHMMIKAAGSSEKSGIASSSDGNGDGGGIDDFWGEIELPELMNSKWWTFSGDITACL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0643 177 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677
Lan11g0643 177 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 174 - -
Lan11g0643 177 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lan11g0643 177 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Lan11g0643 177 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lan11g0643 177 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Lan11g0643 177 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Lan11g0643 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 174 - -
Lan11g0643 177 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Lan11g0643 177 MobiDBLite consensus disorder prediction 1 39 - -
Lan11g0643 177 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lan11g0643 177 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0643 Lan-Chr11 5354903 5355606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0643 1 164 AP2-EREBP Transcription Factor Family AT1G01250 57.803 5.01e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g0643 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0643 K09286 - gmx:100802845 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0643 11 5354903 5355606 Lan11g0643 11 5354903 5355606 ECH
Lan11g0643 11 5354903 5355606 Lan9g0985 9 16690506 16691211 LSH
Lan11g0643 11 5354903 5355606 Lan2g0737 2 15545684 15546411 LSH
Lan4g0798 4 10029644 10031103 Lan11g0643 11 5354903 5355606 PCT
Lan11g0643 11 5354903 5355606 Lan4g0798 4 10029644 10031103 PCT