Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0635 ATGGGAAGAGCACCTTGTTGTTCTAAAGTTGGGTTGCACAAAGGTGCATGGACTCCTAAAGAAGATGCATTACTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAAGTCACTACCAAAAAAGGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGGTGGATGAACTATCTAAGACCAGATATAAAGAGAGGTAACATAACTCTAGAAGAAGATGATCTTATCATCAGAATGCATTCTCTTCTTGGAAATAGGTGGTCTCTTATAGCAGGAAGAATACCAGGGCGAACAGATAATGAAATAAAGAACTATTGGAACACTCACCTTTGTAAAAAGATGAGAAATCAAGGACCAGATCTAGATGAAGAATCACCCAGTGCCAGCAAAAAGAAGACAAAGAAGAACAAACAGAAGAAGGACAAGAAGAAAAACAAAGAAACAAATGAAGATGAAGAGATACAGAAGAAGACAAAAGTTTATTTACCAAAACCCATTAGGGTCAAACCTTTAACTTTGCCAAGAACAGATAGTAGTTTCACCTTTGATTCAAGTGCGTCATCAAGCCAAGGTAATAATAATAGTAATAGTAAGGTTGAAAGCCAAGAAGGAACAGAAGATGTGATGAATTTGGTGTGTGAAGTTGGTATGGGAGAAAATGATGGGTTTGGCTTTTTTTGTGAAGACCATGACATAGTCAATGAATCAAATGTGTTGGAATGCCAAACATATTTTCCCATGGATCATGGCCAAGGCACGTTAGAGAAACTATATGAAGAGTACTTTCAACTCTTGAGCGTGGAAGATACTTGCCAATATGAATTGGATTTAGATTCTTTTGCTGAATCTTTTTTGGTCTAA 867 0.3725 MGRAPCCSKVGLHKGAWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITLEEDDLIIRMHSLLGNRWSLIAGRIPGRTDNEIKNYWNTHLCKKMRNQGPDLDEESPSASKKKTKKNKQKKDKKKNKETNEDEEIQKKTKVYLPKPIRVKPLTLPRTDSSFTFDSSASSSQGNNNSNSKVESQEGTEDVMNLVCEVGMGENDGFGFFCEDHDIVNESNVLECQTYFPMDHGQGTLEKLYEEYFQLLSVEDTCQYELDLDSFAESFLV* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0635 288 MobiDBLite consensus disorder prediction 181 207 - -
Lan11g0635 288 MobiDBLite consensus disorder prediction 118 133 - -
Lan11g0635 288 CDD SANT 16 61 IPR001005 -
Lan11g0635 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan11g0635 288 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan11g0635 288 MobiDBLite consensus disorder prediction 118 155 - -
Lan11g0635 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan11g0635 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan11g0635 288 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 271 - -
Lan11g0635 288 SMART sant 13 63 IPR001005 -
Lan11g0635 288 SMART sant 66 114 IPR001005 -
Lan11g0635 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan11g0635 288 MobiDBLite consensus disorder prediction 181 206 - -
Lan11g0635 288 Gene3D - 71 162 - -
Lan11g0635 288 CDD SANT 71 112 IPR001005 -
Lan11g0635 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan11g0635 288 Coils Coil 132 152 - -
Lan11g0635 288 PANTHER MYB TRANSCRIPTION FACTOR 1 271 - -
Lan11g0635 288 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan11g0635 288 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0635 Lan-Chr11 5268955 5270441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0635 1 128 MYB Transcription Factor Family AT4G38620 71.094 2.18e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan11g0635 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0635 K09422 - gmx:100803345 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0635 11 5268955 5270441 Lan11g0635 11 5268955 5270441 ECH
Lan11g0635 11 5268955 5270441 Lan9g0988 9 16725153 16727498 LSH
Lan2g0376 2 3717603 3720314 Lan11g0635 11 5268955 5270441 PCT
Lan11g0635 11 5268955 5270441 Lan2g0376 2 3717603 3720314 PCT