Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0625 ATGTTAAACCACATGGAATATACTTATTCAGCTGAAGCTGCTACTGATGCAGAAAATTATAGCAGCATAACTCCACCATCAGCTATGAGAAAGAAGAAAAACAAAAACACAAGGAGGTTCAGTGATGAACAAATCAGATCATTGGAATCTATGTTCGAGACAGAGTCAAAGCTAGAACCTGGAAAGAAGTTGAAGTTGGCAAGAGAGCTTGGGTTGCAGCCAAGACAAATTGCTATATGGTTTCAGAACAGGAGAGCTAGATGGAAATCAAAGCAACTTGAGAGAGATTGCAGCATACTTAGATCCAATCATAACAATTTGGCTTCAAAATTTGAAGCTCTCAAGAAGGAGAAGCAAGCATTATTAGTACAGTTGCAGAAACTGAATGATATAATACAGAAGCCACAAGAGGAAGCTCAGAGTTCTACTTCTACACAAGTTGAAGCATCAAACATCATGAACAGTAACTCAGAAAATGGAGACACAATCAAATGTGAAGCTGAGGTAAAGGCAAGGACATCAATGGAAAAATCAGAACATGTACTTGGTGTTCTTTCTGATGATGATACAAGCATAAAGGTAGAATACTTTGGCATGGATGATGAACCTGATCTTCTCAATTTTGTTGAACATGCTGAAGGTTCTTTAACCTCACCAGAAGAATGGAGCACCTTTGAATCGGATCATCTCTTAGCCCAATCAACCAGTGATTTTCAATGGTGGGACTTTTGGTCCTAA 738 0.3862 MLNHMEYTYSAEAATDAENYSSITPPSAMRKKKNKNTRRFSDEQIRSLESMFETESKLEPGKKLKLARELGLQPRQIAIWFQNRRARWKSKQLERDCSILRSNHNNLASKFEALKKEKQALLVQLQKLNDIIQKPQEEAQSSTSTQVEASNIMNSNSENGDTIKCEAEVKARTSMEKSEHVLGVLSDDDTSIKVEYFGMDDEPDLLNFVEHAEGSLTSPEEWSTFESDHLLAQSTSDFQWWDFWS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0625 245 SMART HOX_1 34 95 IPR001356 GO:0003677
Lan11g0625 245 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Lan11g0625 245 MobiDBLite consensus disorder prediction 136 160 - -
Lan11g0625 245 Pfam Homeodomain 38 89 IPR001356 GO:0003677
Lan11g0625 245 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Lan11g0625 245 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Lan11g0625 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 245 IPR045224 GO:0003700
Lan11g0625 245 CDD homeodomain 35 92 IPR001356 GO:0003677
Lan11g0625 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 16 245 - -
Lan11g0625 245 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Lan11g0625 245 Coils Coil 104 131 - -
Lan11g0625 245 Pfam Homeobox associated leucine zipper 91 130 IPR003106 GO:0006355|GO:0043565
Lan11g0625 245 SUPERFAMILY Homeodomain-like 17 93 IPR009057 -
Lan11g0625 245 MobiDBLite consensus disorder prediction 20 40 - -
Lan11g0625 245 Gene3D - 27 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0625 Lan-Chr11 5092526 5094051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0625 22 245 Homeobox Transcription Factor Family AT2G46680 50.000 3.16e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan11g0625 Homeodomain 9.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0625 K09338 - gmx:100797862 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0625 11 5092526 5094051 Lan11g0625 11 5092526 5094051 ECH