Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0612 ATGAAGCAGAGCAACACGAAGATGAAGAATGACAATAATAGTAATTGTGCTGAGGAAATGATTAGGTGGGAGAGGATTTTGCCAAAGATGGTTCTTAGAGTTCTTCTCATTGAACCTGATTATTCTACCCGCCACATCATCGCTGCTCTTCTCCGAAATTGCAGTTATAAAGTTACGGCTGTTCCAGATGGATTAAAGGCGTGGCAGGCATTGAAGAGGAAAGCACCTGACATAGATCTCATATTAACAGAAGTGCAGTTGCCAGCAATATCTGGATTTCCACTCCTCACTTTAATCATGGAACATGACATTTGCAAAAACATTCCTGTTATAATGATGTCTTCTCAGGATTCAGTTAGCATGGTTCTTAAATGCATGTCAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGGAGGAATGAGCTTGGGAACTTGTGGCAGCATGTATGGAGAAGACATATTAGAAGTCCTCCTCAAAATACAACTTTACTACAGAAGAGGCTTAAAACTGCCTCAGAAGACAACTCTGCAAGCAATCAATATAGTGGTTTTGTGGCTTCCGCACAGAAAAATAATGAACGGAGTGAGGCTCAAAGCACTTACAGATTGCCATTTTTGGAAGCTGAGAGTACATACATGGAAAATATGCCGGATGCGTCCCAGATGAAGAGTTCTTTGAAATTGAGCAACATTGATGTGGTGAAACATGAAGAGTCTACCACATTTGAAAGTGAATCAGCTAAGCATGATAATGGGTCAGGAGAAACATTTACTGCAGAGGAATCAATTACATTTGTTTTAGAGGGTGCGAGTTGCAGCAAAACTTTTAAATCAGCAGATTTAAGACTAGAACAAGACCTTTGCTGTACAGAAAATGAAGACAAAGATGATGTTTTAGGAGTTATGTTAAGCAGAATCGACCCTTATATTAATTTTGAGATCCAAGGGAGCAGTGAGGAACTGGTAGAGCCTTCAAGAGCAGCTATTAACTTGATTGGCACATTTGATAATCGTCGGAATTACCCTGATGAAAACTGTAGGTTGAGTGATGGTAACACAACCAAATTTGATTTTGATACACGATTGGAACTTTCTTTAAGATGTTCTTCTATGAGCTCATGTAAGCAAGCAAATGAAGCATCTGAGGAAAGACAAAGAATGGACCATTCAAATACATCTGCCTTTTCTTGGTACACTGGTAGTAAGTTATTGCAACCTCTTTTTCCATCACCACCAATTACTTCTGCTATAGTAAACAACACGGTTGGGGGTTCTCATAAATCCCATAAATTATCTAGAAATAGTGTTGACACTTCATATCAGTATGGTGGCACAAATCAAAATCAGGAGAACATGACCACTCTGGTCATTGGTCAGTTTGAACATGTTGAACCAAGATTATCAAACAAGCAATTTGGAATCTTCTCTGGGAATGGGGTTACCTCTGATCTTCCATCTATGGGACATGATAATGTTTTCACTTCTGTTTTATGTGCACAATCTGATGTTCATTCCATATGCAATCCAAAACCAGTATGCCAGGAAGAGAGTTCTTCCTTTCCCACAAGTCAATCCTCTCAATCCAGTCCTGAAAGTCAGAACTCGGAACAACATTGTCACCATTGTGATGAAGCTACGTATACTTCCCGTGATAAAAATGTACATGATAAAAGCAATTTGAATCATGCAAGGCTTGATTCTCCGGCTGCTAGTCAAACTGCTGGTAATACTAGTTTATGCCATGATGGTGCAAATCATATTAATAGTGCACATGGAAACATAGGCAGTGGAAGTGATGGAAATGCTACTTCAAGTGTGGTAACCAAGAACAACCCTCAAATTTTTAGTGACAGTAGTTGCCCTGATTATGGTGGATTTAGAGGAACAAAATCTTATGACTCAAGTCAAAGAGAAGCAGCTCTAGAAAAGTTTCGACTGAAACGAAAAGAAAGATGCTATGAGAAAAAGGTTCGATATCAAAGCCGGAAAAGACTTGCAGAGCAGCGCCCTCGGGTCAAAGGGCAATTTGTACGCCAAGTTGATTCATAA 2052 0.3942 MKQSNTKMKNDNNSNCAEEMIRWERILPKMVLRVLLIEPDYSTRHIIAALLRNCSYKVTAVPDGLKAWQALKRKAPDIDLILTEVQLPAISGFPLLTLIMEHDICKNIPVIMMSSQDSVSMVLKCMSKGAADFLIKPVRRNELGNLWQHVWRRHIRSPPQNTTLLQKRLKTASEDNSASNQYSGFVASAQKNNERSEAQSTYRLPFLEAESTYMENMPDASQMKSSLKLSNIDVVKHEESTTFESESAKHDNGSGETFTAEESITFVLEGASCSKTFKSADLRLEQDLCCTENEDKDDVLGVMLSRIDPYINFEIQGSSEELVEPSRAAINLIGTFDNRRNYPDENCRLSDGNTTKFDFDTRLELSLRCSSMSSCKQANEASEERQRMDHSNTSAFSWYTGSKLLQPLFPSPPITSAIVNNTVGGSHKSHKLSRNSVDTSYQYGGTNQNQENMTTLVIGQFEHVEPRLSNKQFGIFSGNGVTSDLPSMGHDNVFTSVLCAQSDVHSICNPKPVCQEESSSFPTSQSSQSSPESQNSEQHCHHCDEATYTSRDKNVHDKSNLNHARLDSPAASQTAGNTSLCHDGANHINSAHGNIGSGSDGNATSSVVTKNNPQIFSDSSCPDYGGFRGTKSYDSSQREAALEKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVDS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0612 683 Gene3D - 30 264 - -
Lan11g0612 683 SMART REC_2 32 147 IPR001789 GO:0000160
Lan11g0612 683 MobiDBLite consensus disorder prediction 513 536 - -
Lan11g0612 683 MobiDBLite consensus disorder prediction 565 614 - -
Lan11g0612 683 ProSiteProfiles CCT domain profile. 638 680 IPR010402 GO:0005515
Lan11g0612 683 SUPERFAMILY CheY-like 32 166 IPR011006 -
Lan11g0612 683 MobiDBLite consensus disorder prediction 564 614 - -
Lan11g0612 683 CDD psREC_PRR 34 137 - -
Lan11g0612 683 Pfam CCT motif 638 680 IPR010402 GO:0005515
Lan11g0612 683 MobiDBLite consensus disorder prediction 513 540 - -
Lan11g0612 683 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Lan11g0612 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 229 668 IPR045279 GO:0009736
Lan11g0612 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 225 IPR045279 GO:0009736
Lan11g0612 683 Pfam Response regulator receiver domain 34 143 IPR001789 GO:0000160
Lan11g0612 683 PANTHER PRR RESPONSE REGULATOR 14 225 - -
Lan11g0612 683 PANTHER PRR RESPONSE REGULATOR 229 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0612 Lan-Chr11 4914515 4919328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0612 635 683 Response Regulator Gene Family AT5G24470 83.673 2.42e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lan11g0612 Response_reg 1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0612 K12130 - gmx:100791698 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0612 11 4914515 4919328 Lan11g0612 11 4914515 4919328 ECH