Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0611 ATGGATAGGCTTCAAGGACCTGGCCCCCTCAATTCCTGTTTCAAAGGTGACCATTTTGAAGTGAATCGTTTTGAGCAAGATTTGGTTAATGCACAAAGCTTGAGATTTGTGGAAGATGAACAACAATTTATGATATCAAGTTTAGAGGATAACATGCCATTCTTGCAAATGCTTCAAAGCGTGGAGTCTACTCCACACATTTTCCCTTTCAAGGAGCCAAGTTTTAGAACAATTCTGAGTCTCCAAAACATGAAGAAACAACAACCATGGGAAAGTACGGCCTACATTCCAATAATGGAGACTCAGGTTCAAGCAGCAATGGAACTTGAGAGTTGTGTGACACATGACATATTGGAGATGCAGTCACCAATGAAATCTGAAAGCAATGAACTTCAACAACACACACCTTCATGTGTCGAGAAAATGATGAGTTATGATGAGTGCAACCATGTTATTATTGCAAATGCAAACACACAATCATGCCATAAAACTCAGATAGCTACAAGGGAGAAAAGGAAGAGAAAGAGAACAAGACCAACTAAGAACAAAGAAGACGTGGAGAATCAACGCATGACTCACATTGCTGTCGAACGCAATAGGAGACGCCAAATGAATGACCATCTCAGTGTTCTAAGATCTCTCGTGCCCCCTTCCTACATTCAAAGGGGTGACCAAGCTTCTATAATTGGAGGTGCAATTGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCACTTGAAGCACAGAAAATGGTGAGAAAGAATGAAGAGAGTGGTAGTGGTAATGGTTCTTATTCAAGTGGGTTGTGTAAGCCAGCGGGGTCATTATCAAGTGAAGAAGCGAAGTTTGGGGATGAAGTGAGGGCAGAAATGAAGTCAAATTTGGGGCACATAGAGGTTACTTTGATTCAAACCCATGTTAACTTGAAAATTGAGTGCCAAAGGAGGCATGGTCAATTAATAAAGGCCATTCTTGCTTTAGAAGACCTTAGACTAACTATTCTGCACCTCAACATTACCTCCACCGTGACTTCTGTCCTATACTCTTTCAATCTCAAGATTGAAGAAGAGTGCAAGCTAAGTTCAGCAAATGATATTGCAGAAGCAGTTCATCAAATATTCAACTTCATTAATGGTAACTAG 1143 0.4051 MDRLQGPGPLNSCFKGDHFEVNRFEQDLVNAQSLRFVEDEQQFMISSLEDNMPFLQMLQSVESTPHIFPFKEPSFRTILSLQNMKKQQPWESTAYIPIMETQVQAAMELESCVTHDILEMQSPMKSESNELQQHTPSCVEKMMSYDECNHVIIANANTQSCHKTQIATREKRKRKRTRPTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLVPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKMVRKNEESGSGNGSYSSGLCKPAGSLSSEEAKFGDEVRAEMKSNLGHIEVTLIQTHVNLKIECQRRHGQLIKAILALEDLRLTILHLNITSTVTSVLYSFNLKIEEECKLSSANDIAEAVHQIFNFINGN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0611 380 Coils Coil 236 256 - -
Lan11g0611 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 239 IPR011598 GO:0046983
Lan11g0611 380 SMART finulus 194 245 IPR011598 GO:0046983
Lan11g0611 380 PANTHER MAX DIMERIZATION, MAD 21 379 - -
Lan11g0611 380 MobiDBLite consensus disorder prediction 163 186 - -
Lan11g0611 380 CDD bHLH_AtFAMA_like 191 257 - -
Lan11g0611 380 Pfam Helix-loop-helix DNA-binding domain 189 240 IPR011598 GO:0046983
Lan11g0611 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 251 IPR036638 GO:0046983
Lan11g0611 380 Gene3D - 178 256 IPR036638 GO:0046983
Lan11g0611 380 PANTHER TRANSCRIPTION FACTOR BHLH70 21 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0611 Lan-Chr11 4904858 4907849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0611 57 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 44.350 4.64e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0611 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0611 - - gmx:100789928 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0611 11 4904858 4907849 Lan11g0611 11 4904858 4907849 ECH
Lan11g0611 11 4904858 4907849 Lan9g1017 9 17172866 17176146 LSH