Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0610 ATGGAAAAAGTAGAACAAACCAATGTTGCACTTTCACATGTTGATCCTAAAGAGGAACAATTTAACCACAAAATAATCACGGTGGAAGAAAAAAGCTTCACCTATGCTATGCAGCTGGTAAACTCTAGTGTGGTTTCAATGGCGACGAAATCAGCCATTGAGCTTGGCGTATTTGACATCATAAACAAAGCAGGTGCAGGTGCCAAGCTCTCTGCTAAGGACATTGCTGAAGAGTTTTCATGCAAGAATCCTGATGCAGCAACAATGCTAGACCGTATTCTAAGGCTCCTTGCAAATCATTCCATTGTTGATTGTACTGTGATTGATGATGAAAATGGTCCTCCTCCACATTTGCAGAGGCTCTATTCCATGGCCCCTGTGACCAAATACTTTGTTTCCAGTGGTGATGATGGGTCATTGGGACCTTTGATGGTGTTGACTCAGGACAAGGCCGTTCTTGAAAGTTGGTACGAACTAAAGGATGCAATTTTGGAAGGAGGTATTCCATTCAACAGGGTCCATGGCAAACACGTCTTCCAGTATGCCAATTCGAACTTAAGCTTCAATCACCTTTTCAATATAGCAATGATCAATCGTGCCACTTTAGTTATGAATAAGATTGTTGAATCTTACAAGGGGTTTGAGCATATCAATAAGCTTATTGACGTTGGTGGTGGTCTTGGTGTCACCCTTAACATAATTACATCTAAATACCCTCACATTCAGGGTATCAATTTTGACTTGCCTCAGGTCATAGAACATGCCTCTCCATATCCAGGTGTTGAACATGTGGGAGGAAATATGTTCGAAAATGTACCACAAGGAGATGCCATTTTGATGAAGTGTGTACTTCATGACTGGAGTGATGAAGACTGCTTGAAAGTGTTGAAGAATTGCTATGCTGCTATTCCTGATAATGGTAAAGTGATTGTTGTGGAAGGAGTTCTTCCATTTGAACCAGAGACAACAGATACAGTGAAGAGTATTTCTCAATTTGATGTTCTCATGATGACAACAAACCCAGGAGGGAAAGAAAGAAGTGAATATGAGTTCATGACACTAGCAAAAGGTGCTGGATTCAGTGGCATTTCATATAAATGTTTCGTCTATGAGTTCTGGGTTATGGAATTCTTCAAGTAG 1140 0.4061 MEKVEQTNVALSHVDPKEEQFNHKIITVEEKSFTYAMQLVNSSVVSMATKSAIELGVFDIINKAGAGAKLSAKDIAEEFSCKNPDAATMLDRILRLLANHSIVDCTVIDDENGPPPHLQRLYSMAPVTKYFVSSGDDGSLGPLMVLTQDKAVLESWYELKDAILEGGIPFNRVHGKHVFQYANSNLSFNHLFNIAMINRATLVMNKIVESYKGFEHINKLIDVGGGLGVTLNIITSKYPHIQGINFDLPQVIEHASPYPGVEHVGGNMFENVPQGDAILMKCVLHDWSDEDCLKVLKNCYAAIPDNGKVIVVEGVLPFEPETTDTVKSISQFDVLMMTTNPGGKERSEYEFMTLAKGAGFSGISYKCFVYEFWVMEFFK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0610 379 Gene3D - 13 131 IPR036388 -
Lan11g0610 379 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 37 379 IPR016461 GO:0008168
Lan11g0610 379 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 377 IPR029063 -
Lan11g0610 379 Pfam O-methyltransferase domain 156 361 IPR001077 GO:0008171
Lan11g0610 379 PANTHER O-METHYLTRANSFERASE 31 379 IPR016461 GO:0008168
Lan11g0610 379 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 31 379 - -
Lan11g0610 379 Gene3D Vaccinia Virus protein VP39 133 379 IPR029063 -
Lan11g0610 379 PIRSF O-mtase 15 379 IPR016461 GO:0008168
Lan11g0610 379 Pfam Dimerisation domain 47 98 IPR012967 GO:0046983
Lan11g0610 379 SUPERFAMILY "Winged helix" DNA-binding domain 30 133 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0610 Lan-Chr11 4895070 4897493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0610 18 379 Monolignol Biosynthesis Gene Families AT5G54160 47.514 1.76e-124 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0610 K13066 - gmx:100788873 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0610 11 4895070 4897493 Lan9g1018 9 17197841 17201293 LSH
Lan4g0814 4 10139126 10141551 Lan11g0610 11 4895070 4897493 PCT
Lan11g0610 11 4895070 4897493 Lan4g0814 4 10139126 10141551 PCT