Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0601 ATGGCTTCAGCATTTGCTTCTTCTGCTATTGCAGCTATTGCCATCTCTACCCCAAGTTCTCAGAAGAATGGATCACCCTTGGGAACTACAAAAGCTGGTTTTCTTAGTGGGAGGAAAGTGAAAGTGAACCACTTTGCAGCACCAGTTGGAGGGAGATCCAGCACTACAGTGTGTGCAGTAGCTGACCCTGACAGGCCCCTATGGTTCCCAGGCAGCACCCCTCCTGCATGGCTTGATGGTAGTCTCCCAGGAGACTTTGGTTTTGACCCTCTTGGTCTTTCATCTGATCCTGAGAGCCTAAGATGGAATGTTCAAGCAGAGTTAGTACACGGCAGATGGGCAATGTTGGGTGCTGCTGGCATCTTCATCCCAGAATTCCTAACAAAGATTGGTATCCTAAACACCCCTTCATGGTACACTGCTGGAGAACAAGAATACTTCACAGACACAACCACACTTTTCATAGTTGAGCTCATTTTCATTGGCTGGGCTGAGGGTAGAAGGTGGGCTGATATAATCAAGCCAGGGTCTGTCAACACTGACCCTATCTTCCCCAACAACAAGCTCACAGGGACCGATGTCGGGTACCCGGGTGGGCTTTGGTTTGACCCTCTTGGATGGGGAAGTGGTTCTCCTCAGAAGCTGAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATAGGTGCATGGTTCCAGCATATATACACTGGCACTGGTCCCATAGATAACCTCTTTGCTCATCTTGCAGATCCTGGCCATGCTACTATTTTTTCTGCGTTCAGCCCGAAGTGA 813 0.492 MASAFASSAIAAIAISTPSSQKNGSPLGTTKAGFLSGRKVKVNHFAAPVGGRSSTTVCAVADPDRPLWFPGSTPPAWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHGRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVIGAWFQHIYTGTGPIDNLFAHLADPGHATIFSAFSPK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0601 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 269 IPR001344 GO:0009765|GO:0016020
Lan11g0601 270 SUPERFAMILY Chlorophyll a-b binding protein 60 267 - -
Lan11g0601 270 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 269 - -
Lan11g0601 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
Lan11g0601 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0601 Lan-Chr11 4785948 4787865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0601 47 270 Chloroplast and Mitochondria Gene Families AT3G61470 89.333 5.01e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0601 K08908 - gmx:100802138 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1133 16 18397258 18400788 Lan11g0601 11 4785948 4787865 PCT
Lan11g0601 11 4785948 4787865 Lan16g1133 16 18397258 18400788 PCT