Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0590 ATGGGTGGTTCAGCCTCAAGTAACACATTGAATGAGTCACCTACCAATGAGATAAGTACAAAGATCATAGTGGCATCTGTAATATTCCTCTTCATGGTGGTGTTATTTGTTATCTTACTCAATCTCTATTCTAGATGGTTCTGGTGGCGCATCGAGGAGGAAACAACCGCTCCTCCTCCACGCCGCCACCGCCGATTTGTCTTTGCACCAGGGCAAGACTCAGTTACCAGTGTTGGCACTCAGCAACTTGGTCTTGACCCTGAAATTCTTAAGTCCTTGCCTTTATTGGTGTTCAAACCTGAGGAGTTTAAAGATGGTTTGGAATGTACAGTTTGCCTCTCTGAGATTGTTGAAGGTGAAATAACAAGGCTTTTACCTAAATGCAATCATGGGTTTCATGTATATTGCATAGATATGTGGTTCCATTCACATTCTACTTGTCCTCTTTGTAGGAACCTAGTTGCTTCTGAATCTGAATCCTCCAAAGATATTATTAGTACTTCAAATGCTGAAGAGAATTTGCTTAGTAATAGTGAGTCATTAGAAGCAGAAAATTCAAGTGCTATGAGTGACTTAGAGTCTCAAAGTTTTCCTACAAATGTACTTGTTTGGGGAAACCCAAACCAAGTAAGTACTTATGTTAATTGTTTCATAGAAGAAGGCACTTCTGAGCAACCACCTAACTCATCAATATCTACACCATCTACTTCAAGCAGTGATGATGATATTGTTAATAGTGGATGCCATGAAATGTTGATGATTGATATATCAAGTGAGTTAAGTTCCTCATCATTATCACCTTCTTCTGAGACAAGGTGTGTTGAAGATGAGTTGAAATCACCAATGAGTACCAAATTGAGGTCATTTAAGAGGCTTTTAAGCAGGGATAAAAAGTTAAGTACCTTTAGTCCTGCTTCTATGGATGTGGAACAAGCATAA 939 0.3908 MGGSASSNTLNESPTNEISTKIIVASVIFLFMVVLFVILLNLYSRWFWWRIEEETTAPPPRRHRRFVFAPGQDSVTSVGTQQLGLDPEILKSLPLLVFKPEEFKDGLECTVCLSEIVEGEITRLLPKCNHGFHVYCIDMWFHSHSTCPLCRNLVASESESSKDIISTSNAEENLLSNSESLEAENSSAMSDLESQSFPTNVLVWGNPNQVSTYVNCFIEEGTSEQPPNSSISTPSTSSSDDDIVNSGCHEMLMIDISSELSSSSLSPSSETRCVEDELKSPMSTKLRSFKRLLSRDKKLSTFSPASMDVEQA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0590 312 SMART ring_2 109 150 IPR001841 -
Lan11g0590 312 MobiDBLite consensus disorder prediction 259 280 - -
Lan11g0590 312 PANTHER RING-H2 FINGER PROTEIN ATL3 4 304 - -
Lan11g0590 312 MobiDBLite consensus disorder prediction 165 188 - -
Lan11g0590 312 Pfam Ring finger domain 108 151 IPR001841 -
Lan11g0590 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Lan11g0590 312 SUPERFAMILY RING/U-box 89 155 - -
Lan11g0590 312 MobiDBLite consensus disorder prediction 221 244 - -
Lan11g0590 312 CDD RING-H2_EL5_like 108 151 - -
Lan11g0590 312 Coils Coil 311 312 - -
Lan11g0590 312 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lan11g0590 312 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 304 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0590 Lan-Chr11 4691908 4692964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0590 17 297 C3H Transcription Factor Family AT1G53820 40.864 1.02e-56 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0590 - - gmx:100775523 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0825 4 10237167 10238747 Lan11g0590 11 4691908 4692964 PCT
Lan16g1126 16 18334676 18351157 Lan11g0590 11 4691908 4692964 PCT
Lan11g0590 11 4691908 4692964 Lan4g0825 4 10237167 10238747 PCT
Lan11g0590 11 4691908 4692964 Lan16g1126 16 18334676 18351157 PCT