Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0582 ATGGCTTCCTCATCCAAGAAAAATATTGCAACAACCACAATACAACACAACAAGAGAAAGATTGAGAAACTTGAACCAAACACCAACAAGTTTCATGTAACCTTCTCCAAACGCAAACTAGGGCTTTTCAACAAAGTTACTGAAATTTCCATTCTATGCCAAGCTGAAACTGCTTTGATCCTTTCTTCTCAACAAGGCAATCTCTACGCTTGCGGCTACCCTGGCCCCGACGTGGTCATCCGCCGCTTCCTCACCAATGGTTCTCCGGTGCAACACAGCCGCACCAGCAAAAAGGAGCAGCAAGAATTTGTTGAAACCCTAAGGCTTGAATTTGAGGCTGCTCACAACAAGTTGAAAGAAGAGAAGAAGAGATTGGATGAGATCCGAGAGGCACATAATGGTCGTTTGGATTTAACCCCTTGGTGGAATCAAGATATTGAAAAAATGGGTTTGGAGGATCTTGAACACTTCATAACTTCCTTAGAGACATTGAAGCTAAACCTTGTTGCTACAGCTGAAGCAAAGAAGATTAATCCAATGTCACATATGGTGATGACAAATGCAATAGGTCCAAGTCCAAGGTTTTCAAACTCGTCACTCATGAATGGGTATTTCACTGGAAATCATCAAGCATGGAATTGGATGGGTAGTAGCAGTAGTAGTAACCTAACGGTTCCCAAGTTTCAGCCTGGTTATTATATTAGGCATAGCTAG 714 0.423 MASSSKKNIATTTIQHNKRKIEKLEPNTNKFHVTFSKRKLGLFNKVTEISILCQAETALILSSQQGNLYACGYPGPDVVIRRFLTNGSPVQHSRTSKKEQQEFVETLRLEFEAAHNKLKEEKKRLDEIREAHNGRLDLTPWWNQDIEKMGLEDLEHFITSLETLKLNLVATAEAKKINPMSHMVMTNAIGPSPRFSNSSLMNGYFTGNHQAWNWMGSSSSSNLTVPKFQPGYYIRHS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0582 237 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Lan11g0582 237 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lan11g0582 237 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lan11g0582 237 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lan11g0582 237 SMART madsneu2 14 74 IPR002100 GO:0003677|GO:0046983
Lan11g0582 237 Coils Coil 104 135 - -
Lan11g0582 237 PANTHER MADS BOX PROTEIN 14 182 - -
Lan11g0582 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 70 IPR002100 GO:0003677|GO:0046983
Lan11g0582 237 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 14 182 - -
Lan11g0582 237 Gene3D - 28 110 IPR036879 GO:0003677|GO:0046983
Lan11g0582 237 ProSiteProfiles MADS-box domain profile. 14 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0582 Lan-Chr11 4636567 4637280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0582 18 177 Type I MADS-box Gene Family AT5G60440 34.545 1.22e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan11g0582 SRF-TF 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0582 - - lang:109356483 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0582 11 4636567 4637280 Lan9g1042 9 17643950 17644764 LSH
Lan11g0582 11 4636567 4637280 Lan2g0862 2 18925291 18940058 LSH