Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0580 ATGTGTGGAGGAGCTATTATCTCCGATTTCATTCCGGCCGCCGGCATGGCGGCAGGGATGTCCCGGCGTGTGACAGCCGACATATTGTGGCCAAGTTTGAGGAACCAGGCGGGTAAGAAGTTCTCGAAGCTTCCAAAGCCGGAGGCGGTGGCGTTGAACGATGATTTCGAAGCTGATTTTCGAAATTTCAAGGATGATTCTGACATGGAAGAAGAAGAAGATGACTTGATTGAAGGTGGTTTCGCACCCACAAAGCCTTCTAATCAGAATCCGAAGTCTCTGTCTCATGGATCTACAGCTACGAAACTGAATGAGCAAGCTGAGGAGTCTTCTAGGAGAAAGAGGAAGAATCAGTATCGGGGAATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGGGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGATGCTGAAGCAAGGAGGATCCGTGGAAAGAAAGCCAAGGTCAATTTCCCTGTTAAGGCTCCAGCTGCAACCCCAAAATGTCTTAAGGCAAGGAAGGAAAATGTCAATTTTGTTCAACCTAAAGTGAACAAGATGCTCAATCTGGAGGACTACTTTATGGATCAGGTGGAACAGAAACCAGAAATTAACCAGTATTCTAACATAGGTCCCTTCCCTGGAAATGGACTTGGGCTCACACCCCTTGATGCATCTGATAATGTCACAGCTTATTTCAGTTCCGAGTACTCAAGTAATTCATTTGATTATTCTGATCTCGGATGGAGCAAACAAAGCCCGAAGACTCCAGAGAACTCATCTGTGCTTTCTGCTCATATGGAAGGGCAATCTGAATTTGTTGAGGTTGCTAATCAGCAGAAAAACCTGCAGCCTAACTCTCAGGATATCGTATTCATGGAAGATCAAGCCGAAAAGACACTAACCGAGGACCTCATAGATATTGAATCCCACATGAAGTTCTTTGAAGAGGCCCCTTACCTTGGTAGGACCTGGGATGATGCTTCATTTTCATCATTCCTTGGTGGAGACACAACTCAGGATGCTGGAAATCCAATCAACCTTTGGAATTTTGAGGACATGCCTTCAATGGCTGGTGGAGTTTTCTGA 1137 0.4609 MCGGAIISDFIPAAGMAAGMSRRVTADILWPSLRNQAGKKFSKLPKPEAVALNDDFEADFRNFKDDSDMEEEEDDLIEGGFAPTKPSNQNPKSLSHGSTATKLNEQAEESSRRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPVKAPAATPKCLKARKENVNFVQPKVNKMLNLEDYFMDQVEQKPEINQYSNIGPFPGNGLGLTPLDASDNVTAYFSSEYSSNSFDYSDLGWSKQSPKTPENSSVLSAHMEGQSEFVEVANQQKNLQPNSQDIVFMEDQAEKTLTEDLIDIESHMKFFEEAPYLGRTWDDASFSSFLGGDTTQDAGNPINLWNFEDMPSMAGGVF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0580 378 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Lan11g0580 378 PANTHER DNA-BINDING DOMAIN 1 372 IPR044808 GO:0003700|GO:0009873
Lan11g0580 378 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Lan11g0580 378 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Lan11g0580 378 MobiDBLite consensus disorder prediction 67 122 - -
Lan11g0580 378 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lan11g0580 378 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Lan11g0580 378 PANTHER EREBP TRANSCRIPTION FACTOR 1 372 - -
Lan11g0580 378 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Lan11g0580 378 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Lan11g0580 378 MobiDBLite consensus disorder prediction 83 105 - -
Lan11g0580 378 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0580 Lan-Chr11 4617673 4620480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0580 1 378 AP2-EREBP Transcription Factor Family AT1G53910 43.609 3.89e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g0580 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0580 K09286 - gmx:547957 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0580 11 4617673 4620480 Lan2g0327 2 2901269 2903522 LSH
Lan4g0830 4 10286988 10289451 Lan11g0580 11 4617673 4620480 PCT
Lan11g0580 11 4617673 4620480 Lan4g0830 4 10286988 10289451 PCT