Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0558 ATGCAGAATTACAGGCTTAAGCAGCAACAGCAACAGCAACAACAACAACAAGCTCTGATGCAACAAGCTCTTCTTCAACAACAATCTCTCATTCAACAACAATCTCTCCTTCAACAACAATCTCTCTACCATCCTGGTCTCCTAGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACTCAAGTAACCGAGCCGCTTTTGCAAGAAGTTTTCGCAGGTACTGGTCTGGTTGAAGGTTGCAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCACTACTTCGATCGCAGATCTGCTGCTCTTGCCATAGTATCTCTCAATGGAAGGCATTTATTTGGGCAGCCTATCAAAGTTAACTGGGCTTACGCTAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATATTTGTCGGTGATCTGAGTCCTGAGGTCACTGATGCTATGTTGTTTGCATGCTTTTCTGTCTACCCGAGTTGCTCAGATGCGAGGGTTATGTGGGATCAAAAGACTGGGCGTTCAAGGGGGTTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCCATAAATGATTTGACTGGCAAGTGGCTTGGAAGCAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTGGCATTGATGATAAGCCAAACTCAGACACCAAAAGTGTAGTGGAACTAACAAATGGATCATCTGAAGATGGTAAAGAGACACTGAACAGTGATGCTCCTGAGAACAATCCTCAATATACGACTGTCTATGTGGGTAACCTTGCTTCAGAGGTAACACAACTTGATCTTCATCGCCACTTCCACTCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGTGTTCAGCGTGACAAAGGCTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGGTGGGGAATGCCCAGTCCATCCTATGTGGCAAACCAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGCAACAATGTCCGGCTTCTCTGCGACCGATCTTTTACTCTATGAGCGACAGCTAGCAATGAGCAAGATGGCTGGTGTCCATGCTTTGAATCCTTTGATGCATCATCCTCAAGGACAACATCCTCTTAAACAGGCACCAATCGGAGCTAGCCAGATATACGATGGCGGGTTCCAGAATGTTGCTGCTGCACAGCAAATGATGTACTACCAGTGA 1317 0.4647 MQNYRLKQQQQQQQQQQALMQQALLQQQSLIQQQSLLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGLVEGCKLIRKEKSSYGFIHYFDRRSAALAIVSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDAMLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIDDKPNSDTKSVVELTNGSSEDGKETLNSDAPENNPQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQVGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAATMSGFSATDLLLYERQLAMSKMAGVHALNPLMHHPQGQHPLKQAPIGASQIYDGGFQNVAAAQQMMYYQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0558 438 MobiDBLite consensus disorder prediction 248 273 - -
Lan11g0558 438 CDD RRM1_TIA1_like 73 143 - -
Lan11g0558 438 CDD RRM2_PUB1 157 231 - -
Lan11g0558 438 Gene3D - 155 235 IPR012677 -
Lan11g0558 438 MobiDBLite consensus disorder prediction 236 273 - -
Lan11g0558 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Lan11g0558 438 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 25 419 - -
Lan11g0558 438 Gene3D - 254 356 IPR012677 -
Lan11g0558 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 352 IPR000504 GO:0003723
Lan11g0558 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 419 - -
Lan11g0558 438 SUPERFAMILY RNA-binding domain, RBD 150 236 IPR035979 GO:0003676
Lan11g0558 438 SUPERFAMILY RNA-binding domain, RBD 55 149 IPR035979 GO:0003676
Lan11g0558 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 145 IPR000504 GO:0003723
Lan11g0558 438 Coils Coil 6 26 - -
Lan11g0558 438 SUPERFAMILY RNA-binding domain, RBD 265 356 IPR035979 GO:0003676
Lan11g0558 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 228 IPR000504 GO:0003723
Lan11g0558 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 139 IPR000504 GO:0003723
Lan11g0558 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 339 IPR000504 GO:0003723
Lan11g0558 438 Gene3D - 1 154 IPR012677 -
Lan11g0558 438 SMART rrm1_1 278 348 IPR000504 GO:0003723
Lan11g0558 438 SMART rrm1_1 72 141 IPR000504 GO:0003723
Lan11g0558 438 SMART rrm1_1 157 230 IPR000504 GO:0003723
Lan11g0558 438 CDD RRM3_TIA1_like 277 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0558 Lan-Chr11 4344849 4349927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0558 72 352 Eukaryotic Initiation Factors Gene Family AT2G23350 30.479 1.83e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0558 K13201 - gmx:100781227 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0558 11 4344849 4349927 Lan9g1053 9 17732041 17738438 LSH