Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0557 ATGACTAGTTCCCCTGACGCGGTGGTGGGTCGCCGGAGGTCCGGTAAGTCACCGGAGAAGTCCAATTTCTCTCAAACTTGTAGCCTTTTGAGTCACTTATTGAAGGAAAAGCGTAGTTCTGGTGCTTCTACCCTTGGAATTGGTGAAGAAAATGAGCATAAAGCCAATAGGGAGGATTTGCAAAATTCAGATGGGGGTTTGAGATTAAATGCTTCAGCTTTGGATTTCCTTCCCCATCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGATAGGACACCAGGGCCTGAAAGTCCCCAATTGACAATATTCTATGGTGGAAAAATGTTAGTATTTGATGGTTTTCAGCCTGAGAAAGCAACACAGATAATGGAATTAGCTACAAAATTGGCCTCTGATAATCCCAGCATAAAAGAAAGCCTTCCAAGTGCTCCTGAAATTATGAAAGAGTCCAAAGTGCCTCAAACAAACACTGCCTCTGAAACCCCTCGACCAGGAAACCAAGCTGTTGGCCCTGATATGAGATATCCAAGGAGAGCTTCACTCCTAAAATTCCTAGAGAAAAGAAAAGAAAGGGTTATGGCTAAAGGGCCTTACCAAATAAACAACCCCAACCCCATGCATGAGGGAAACAGTTCAGGGAATGGTGAACCTGAAGATCAGTGTTTAGACCTTACCTTGTAG 684 0.4371 MTSSPDAVVGRRRSGKSPEKSNFSQTCSLLSHLLKEKRSSGASTLGIGEENEHKANREDLQNSDGGLRLNASALDFLPHLVENPCIKKSNDRTPGPESPQLTIFYGGKMLVFDGFQPEKATQIMELATKLASDNPSIKESLPSAPEIMKESKVPQTNTASETPRPGNQAVGPDMRYPRRASLLKFLEKRKERVMAKGPYQINNPNPMHEGNSSGNGEPEDQCLDLTL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0557 227 MobiDBLite consensus disorder prediction 1 24 - -
Lan11g0557 227 Pfam tify domain 96 127 IPR010399 -
Lan11g0557 227 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 221 IPR040390 -
Lan11g0557 227 ProSiteProfiles Tify domain profile. 94 129 IPR010399 -
Lan11g0557 227 SMART tify_2 94 129 IPR010399 -
Lan11g0557 227 MobiDBLite consensus disorder prediction 150 165 - -
Lan11g0557 227 MobiDBLite consensus disorder prediction 180 195 - -
Lan11g0557 227 Pfam Jas motif 178 200 IPR018467 -
Lan11g0557 227 MobiDBLite consensus disorder prediction 204 219 - -
Lan11g0557 227 MobiDBLite consensus disorder prediction 40 63 - -
Lan11g0557 227 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 8 221 - -
Lan11g0557 227 MobiDBLite consensus disorder prediction 134 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0557 Lan-Chr11 4338103 4341244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0557 8 216 Tify Gene Family AT1G19180 32.031 1.04e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan11g0557 tify 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0557 K13464 - gmx:100778559 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0557 11 4338103 4341244 Lan9g1054 9 17740403 17742737 LSH