Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0538 ATGTCGACCCAGAATCGTCGTTCATCGTTTTCATCTTCCACAGCGTCGTCTTTTGCAAAACGACATCCATCATCATCGTCGTTTTCGTCGCAGAATGTAGCTGCTAAGAAACGACCACCACTTACCAATGTCACTAATCACAGAACCACCGTTGCTTCTTCCCGTAACTCTACTTTGGTACCATGTTCAAATAAGATTGTCAAGACCAAGAAAGAAATTGATCCTCCTCCTTCAAGCACTACATCTTCTGCAAGTGGGAATAAATTACCCTCTTTGCAGAATGTTAAATCAAGCAAAGTTATTTTCTCTAAGGTCCCACAAAAGAATTATGCTGCCCCTGTCAATGTTCTTGTTCCAAGCAGAATTATTCATGTTTCTCCAAGTAAATCAGATGGGATGTCTGTTTCTATGAGTGATTCTATGTCTTCTTTTGATTCTATCAAGAGTCCTGAAGTTGAATATGTGGATAACACAGATGTTTCAGCTCTTGATTTAATTCAGAGAAAGGCATTCAGCAATCTCAACATTTCTGATACTACTACAGAATCACCAGGTAATATCTGCAGTAGAGACATAAATGTTGAGTTGGAAGGAGAGGATAAAATTATCAACATTGATAATAATTACATGGATCCACAGCTTTGTGCAACCTATGCTTGTGATATCTATAAACATCTCCGTGCATCTGAGTCAAAGAAGAGGCCTTCCATAGATTTCATGGAGAGAATTCAGAAGGACATAAATATCAGCATGCGCGCTATATTGCTCGACTGGCTTGTGGAGGTGGCTGAGGAGTATAGGCTTGTACCTGAAACATTGTATTTAACAGTGAACTACATAGATAGATATCTTTCAGGAAATGCTGTGAATAGGCAACAATTGCAATTACTTGGGGTTGCCTGCATGATGATTGCATCTAAATATGAGGAGATTTGTGCACCTCAAGTGGAAGAATTTTGTTTTATAACTGATAACACATACGTCAAAGAAGAGGTTTTGCAGATGGAATCTGCCATCTTGAATTATCTTAAGTTTGAAATGACAGCCTCAACAACTCACTGTTTCTTAAGACGATTTATTCGTGCAGCTCAAGATGTCAACGAGGTTCCTTCACTGCAAATGGAGTGCTTGACCAACTACATTGCCGAATTGTCGCTCTTGGAGTACAGTATGCTTTGTTATGCACCATCACTTATAGCAGCTTCAGCAATTTTCCTGGCTAAATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCAATTTACTGCATTACACGCAATACCGGCCTTCTGATTTGTGTCGATGTGTAAAGGATCTGCATCATCTTTGTTGCAGCAGATCCACTTCTAACCTACCTGCAATTCAAGAGAAATACAGTCAGCACAAATATAAGTATGTGGCGAAGAAGTACTGCCCTCCTTCGATACCTCAAGAATTTTTCATGAATTGA 1452 0.3926 MSTQNRRSSFSSSTASSFAKRHPSSSSFSSQNVAAKKRPPLTNVTNHRTTVASSRNSTLVPCSNKIVKTKKEIDPPPSSTTSSASGNKLPSLQNVKSSKVIFSKVPQKNYAAPVNVLVPSRIIHVSPSKSDGMSVSMSDSMSSFDSIKSPEVEYVDNTDVSALDLIQRKAFSNLNISDTTTESPGNICSRDINVELEGEDKIINIDNNYMDPQLCATYACDIYKHLRASESKKRPSIDFMERIQKDINISMRAILLDWLVEVAEEYRLVPETLYLTVNYIDRYLSGNAVNRQQLQLLGVACMMIASKYEEICAPQVEEFCFITDNTYVKEEVLQMESAILNYLKFEMTASTTHCFLRRFIRAAQDVNEVPSLQMECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSKKPWNSNLLHYTQYRPSDLCRCVKDLHHLCCSRSTSNLPAIQEKYSQHKYKYVAKKYCPPSIPQEFFMN* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0538 483 SUPERFAMILY Cyclin-like 211 347 IPR036915 -
Lan11g0538 483 MobiDBLite consensus disorder prediction 74 91 - -
Lan11g0538 483 Gene3D - 235 348 - -
Lan11g0538 483 Pfam Cyclin, N-terminal domain 221 347 IPR006671 -
Lan11g0538 483 PANTHER CYCLIN-A1-1 27 482 - -
Lan11g0538 483 CDD CYCLIN 251 340 IPR013763 -
Lan11g0538 483 SMART cyclin_7 257 341 IPR013763 -
Lan11g0538 483 SMART cyclin_7 354 442 IPR013763 -
Lan11g0538 483 PIRSF Cyclin_A_B_D_E 1 479 IPR039361 -
Lan11g0538 483 SMART Cyclin_C_2 350 473 IPR004367 -
Lan11g0538 483 SUPERFAMILY Cyclin-like 351 475 IPR036915 -
Lan11g0538 483 Pfam Cyclin, C-terminal domain 351 469 IPR004367 -
Lan11g0538 483 PANTHER CYCLINS 27 482 IPR039361 -
Lan11g0538 483 MobiDBLite consensus disorder prediction 1 64 - -
Lan11g0538 483 Gene3D - 221 469 - -
Lan11g0538 483 MobiDBLite consensus disorder prediction 1 91 - -
Lan11g0538 483 CDD CYCLIN 351 441 IPR013763 -
Lan11g0538 483 ProSitePatterns Cyclins signature. 252 283 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0538 Lan-Chr11 4181119 4184605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0538 4 483 Core Cell Cycle Gene Families AT1G44110 62.140 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0538 K06627 - gmx:547781 644.039