Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0536 ATGGAACCTGAAGAGGGAAAACAAATTCCCCATAAAAATCCATACACTCAACATGAGGAAGTTAGTTCCGATTTTGGTCTAGCAATTCGCTTGCATGAGCAAGATGGAACATTCCCATCACTCGAAAGTGATAATGAAAGTGATTCTTCATCCTCCTTTGATAATTATTACTATCGCGAGGCCGATTTTTTCCTAAGCCAAGAGATAGAATCAGAGCTTCAGTTTCTTGAGAGTGAAGAAAGCAATGATGATTATGATGATGATGATGATGTTGAAGCTGATGACATTGATGTAGATGAAATGACTTATGAAGAGTTAATTGAGTTGGGAGATTTTATGGGAAAAGAGAAAACAGGATTATCAGCTATTGAAATTTCTTCATGCTTGCATTCTGCTGAAATCAAAAGTGGAATTGACAAGTGTGTAATTTGTCAAGTTGAATATGAAGATGGTGAGGCTCTGGTGGCACTTCAATGTGAGCACCCTTACCATACAGATTGTATAAGCAAGTGGCTTCAGATTAAGAAAGTTTGTCCAATATGTAGCATTGAAATTTCAGTTCCCAATATGGTGAATAAGAATCCTTGA 588 0.369 MEPEEGKQIPHKNPYTQHEEVSSDFGLAIRLHEQDGTFPSLESDNESDSSSSFDNYYYREADFFLSQEIESELQFLESEESNDDYDDDDDVEADDIDVDEMTYEELIELGDFMGKEKTGLSAIEISSCLHSAEIKSGIDKCVICQVEYEDGEALVALQCEHPYHTDCISKWLQIKKVCPICSIEISVPNMVNKNP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0536 195 MobiDBLite consensus disorder prediction 38 53 - -
Lan11g0536 195 Pfam Ring finger domain 139 181 IPR001841 -
Lan11g0536 195 MobiDBLite consensus disorder prediction 1 26 - -
Lan11g0536 195 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Lan11g0536 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Lan11g0536 195 SMART ring_2 141 181 IPR001841 -
Lan11g0536 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 189 IPR045191 GO:0061630
Lan11g0536 195 SUPERFAMILY RING/U-box 101 188 - -
Lan11g0536 195 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 189 - -
Lan11g0536 195 MobiDBLite consensus disorder prediction 34 53 - -
Lan11g0536 195 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0536 Lan-Chr11 4163267 4164024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0536 28 185 C3H Transcription Factor Family AT3G63530 32.683 4.86e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0536 K19045 - gmx:100777284 227.639