Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0518 ATGACTCACATCGCCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCCTTCTTACACTTCCTCAACTCTGTTGAACCGGGTTCTGGGGTTGATGTTGAAGGGATTGATGTTGCTAGGGAGTGTTTGGCTGAGGCTTTTAAGCTTAACAACCATGAAAGTGATGATCATGCAAACCCTGATTCACTCATTGATTTATTCAAATCCCTTGATGCAAACAATCAATGTGAAACTATTAAGCCAGACATTGCTCCTCCTCAACAACCACATTCCGTGGATGCCGCTGCAGCTTCCAGTTCATCTTTCTCTCCTCAGAACCCTGCTCAAACTCAAAATCGTTCCGAGGCACCGAAATCTCCGGATGAAGATTCGATACGGAGGCGTAACACATTTGCAGAATCTAAAGATGAACTAGGTGTACAATTCTTTGCTGCTCTTGAGAAAATTGACTACTTTAGGACCAACGTTGATGGGATTGATGACCCACTGCAACTGGAGAAAGCATCCTGTTTATTGAACGATGCCTTTATGGATATGGAAAAATCTGGGTGTCAAGAGTTTAGTTTGAAGAATTTGGCTGAATCACTAAAATCGCTAGGTAACAAGGCAATGCAATCCAAAAACTATCTGGATGCAATTGAGTTGTATAACTGTGCAATTGCGGTCTATGAAAAGAGTGCTGTTTACTATTGCAACAGGGCAGCTGCATACACACAGATTGACAGATATACGGAGGCAATCCAAGATTGTCTTAAATCTATCGAGATTGATCCGAACTATAGCAAGGCATACAGCCGCCTTGGTTTAGCTTATTATGCACAAGGAAACTACAGGGATGCGATTGATAAAGGGTTTGATAAAGCCTTGCAGCTGGACCCAACTAACGAGTCTGTTAAAGAAAATATACGGGTGGCTCAGCTTAAGTTAATAGAACAATTTGCACGTCAGACTCAGAGTTCAAGACCAAGAAGCAATGCAATGCCATCTTCCTTTACATATACTGGCGATGATATTCCAGAAATTTTCAGGAACATCACCTCAAATTCTGGACATCCTCGTGAAAGCGAAGAAAGTATATCATATGTCAGTCGATCATTTATAAACATGTATGGTGGTGGTGGTGGTGATGATGCACCCTCTAGGCAACCATAA 1152 0.4227 MTHIATDSPLSRRIVRSFLHFLNSVEPGSGVDVEGIDVARECLAEAFKLNNHESDDHANPDSLIDLFKSLDANNQCETIKPDIAPPQQPHSVDAAAASSSSFSPQNPAQTQNRSEAPKSPDEDSIRRRNTFAESKDELGVQFFAALEKIDYFRTNVDGIDDPLQLEKASCLLNDAFMDMEKSGCQEFSLKNLAESLKSLGNKAMQSKNYLDAIELYNCAIAVYEKSAVYYCNRAAAYTQIDRYTEAIQDCLKSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFDKALQLDPTNESVKENIRVAQLKLIEQFARQTQSSRPRSNAMPSSFTYTGDDIPEIFRNITSNSGHPRESEESISYVSRSFINMYGGGGGDDAPSRQP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0518 383 PANTHER LD24721P 7 329 - -
Lan11g0518 383 Pfam Tetratricopeptide repeat 227 260 IPR001440 GO:0005515
Lan11g0518 383 MobiDBLite consensus disorder prediction 78 125 - -
Lan11g0518 383 ProSiteProfiles TPR repeat profile. 227 260 IPR019734 GO:0005515
Lan11g0518 383 Pfam Tetratricopeptide repeat 262 295 IPR013105 -
Lan11g0518 383 SUPERFAMILY TPR-like 192 305 IPR011990 GO:0005515
Lan11g0518 383 Gene3D Tetratricopeptide repeat domain 188 335 IPR011990 GO:0005515
Lan11g0518 383 SMART tpr_5 193 226 IPR019734 GO:0005515
Lan11g0518 383 SMART tpr_5 227 260 IPR019734 GO:0005515
Lan11g0518 383 SMART tpr_5 261 295 IPR019734 GO:0005515
Lan11g0518 383 Gene3D Immunoglobulin FC, subunit C 3 72 - -
Lan11g0518 383 ProSiteProfiles TPR repeat profile. 261 295 IPR019734 GO:0005515
Lan11g0518 383 PANTHER LD24721P 7 329 - -
Lan11g0518 383 MobiDBLite consensus disorder prediction 92 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0518 Lan-Chr11 4017669 4032702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0518 192 300 U-box Gene Family AT3G07370 31.858 7.14e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0518 K16365 - gmx:100799770 450.284