Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0506 ATGGTTAAGAGAGAGAACAACAAGATCCACACCACTCAATCATCAAAGTCAATGCAATCTTTATCTTCACCATCATCATCTGCATCATCAAATGACAAGAAGAAGAAGTACAAGGGTGTGAGAATGAGGAGCTGGGGCTCATGGGTTACAGAGATTAGGGCACCAAACCAGAAAACAAGAATATGGTTAGGATCTTATTCAACTGCTGAGGCTGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCAAATCTCAACTTCCCTTTAACTTCTTCACATTATATTCCTCAAGAAAACACTTCCATGTCTCCAAAATCAATCCAAAGGGTAGCTGCAGCTGCAGCTAACACTTTCATGAACAATGCTAATAGTAATAGCATTACTTCACCTTCACCTCTTATTGCTTCAAACTCATCATCATTGGTCTCATCTCCATTATCAATGTCTTCATCATCTCCTTCTAATCATATAGATGATGATTTCTCACTACTCTCATCATTTAAGGACTACACTAGCTGTGATCAAACACATGAATCAATGGCTATGATGGATTCTTGGTATGGTTTTGATGGATATCATGTTGATCAAATGCTAAGTGGGACATTGTTTGATATTGATTCAACTCAGCTGCTAGATGATCTGTATGAAGAAAGTGATATTCGTTTGTGGAACTTCCGCTGA 696 0.3908 MVKRENNKIHTTQSSKSMQSLSSPSSSASSNDKKKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLTSSHYIPQENTSMSPKSIQRVAAAAANTFMNNANSNSITSPSPLIASNSSSLVSSPLSMSSSSPSNHIDDDFSLLSSFKDYTSCDQTHESMAMMDSWYGFDGYHVDQMLSGTLFDIDSTQLLDDLYEESDIRLWNFR* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0506 231 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
Lan11g0506 231 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lan11g0506 231 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lan11g0506 231 MobiDBLite consensus disorder prediction 11 30 - -
Lan11g0506 231 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lan11g0506 231 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Lan11g0506 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 230 - -
Lan11g0506 231 PIRSF PTI6 126 230 IPR017392 GO:0003700
Lan11g0506 231 PIRSF PTI6 1 153 IPR017392 GO:0003700
Lan11g0506 231 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Lan11g0506 231 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Lan11g0506 231 MobiDBLite consensus disorder prediction 1 38 - -
Lan11g0506 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 10 230 - -
Lan11g0506 231 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0506 Lan-Chr11 3907964 3908898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0506 37 230 AP2-EREBP Transcription Factor Family AT1G21910 50.000 3.25e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g0506 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0506 - - gmx:100813313 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0506 11 3907964 3908898 Lan9g1086 9 18188319 18189211 LSH