Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0505 ATGCCAGTGAACGGTGGCCGAGGCCATTCCCAAAGGTGGTATCAGCAATGTTTTGTTCCAATTAATGCAGAAAGTTCAGATGATTCAGACACAGAATCTGTAATCATACCTAACACTTCAACTACAACTAATGCTACTTGGGAAGAAGAATTTCTTCCACCACCACTTTCTCCACCTCCGCCACCTATTCCACCACCATCACCACCACCTATTCCACCACCACCACCACCAACACTTCCAACTGATAATCGATGGCAAGTTTCTTTTCCACCATTACCAATGACACTGTCACCACCACCACCACCACCACCACTTCCAACTGATAGTCCATGGGATGTTTTTATTGCACCATCACTAATGACACTGTCATCACCACCACTTCCAACTGATAGTCAATGGGATGCTTTTTTTGCACCATCACCAATGACACTGTCCCCACCAACATCGCCGAGCCAATTTTCTCCAGGACTGTCACCACCACCACGTCTACTTTCTTCACCCCCGCCGCCTCCAATTAGTACTAATCCATGGGAAGAACATTTTTCATCATCATCACTACTGCCACTGCCACCGCCACCATCATTGCAGCCGTGGGGGCCGCTTCGACTTTCCTCAACCTCAATGCTAAGGAGTAATGAAGCATTATTTAGCAATGAATCATCACAACATGATACACATGACCATCCTCTCATTAGCAAGGTGAAATTCTCAGAGTTGGATGAGAAAGATAAAGTACCCAATTGTCCTATTTGTATGGAAGAGTTTAAAGATGATGATGAAGCAAGCAAGCTTCCATGTAACCATACCTTCTGTTACAAATGCATTCTTCGTTGGATCAACAATAAAAAAACCTGTCCTGTTTGTAGGCTTCAGTTGGATGATTGCAAAGGTGATGATAGTTTTGATCAAGAACCTCATCAAATCCCTGAACCTGTAATTGAGAATCATATTCAGAATTCATGGAATTACTTTTTTCCTTCGGGTTCTCGAGTTTCGGAGAGTAGTGAAGGTGGCAATTCAGATGAAGGTGGCAATTCAGATGAAGGTGATTTTGAAAGTGCATGTGAAGAGCTAGGTGATTCTAATGCAAATGGAGACATAGTTGGTACTTCTCAAAGTGGTCATGCTTGA 1131 0.4341 MPVNGGRGHSQRWYQQCFVPINAESSDDSDTESVIIPNTSTTTNATWEEEFLPPPLSPPPPPIPPPSPPPIPPPPPPTLPTDNRWQVSFPPLPMTLSPPPPPPPLPTDSPWDVFIAPSLMTLSSPPLPTDSQWDAFFAPSPMTLSPPTSPSQFSPGLSPPPRLLSSPPPPPISTNPWEEHFSSSSLLPLPPPPSLQPWGPLRLSSTSMLRSNEALFSNESSQHDTHDHPLISKVKFSELDEKDKVPNCPICMEEFKDDDEASKLPCNHTFCYKCILRWINNKKTCPVCRLQLDDCKGDDSFDQEPHQIPEPVIENHIQNSWNYFFPSGSRVSESSEGGNSDEGGNSDEGDFESACEELGDSNANGDIVGTSQSGHA* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0505 376 MobiDBLite consensus disorder prediction 23 110 - -
Lan11g0505 376 ProSitePatterns Zinc finger RING-type signature. 266 275 IPR017907 -
Lan11g0505 376 CDD RING-H2_PA-TM-RING 248 289 - -
Lan11g0505 376 MobiDBLite consensus disorder prediction 23 48 - -
Lan11g0505 376 MobiDBLite consensus disorder prediction 52 81 - -
Lan11g0505 376 SMART ring_2 248 288 IPR001841 -
Lan11g0505 376 MobiDBLite consensus disorder prediction 328 342 - -
Lan11g0505 376 Pfam Ring finger domain 247 289 IPR001841 -
Lan11g0505 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 298 IPR013083 -
Lan11g0505 376 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 228 292 - -
Lan11g0505 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 228 292 - -
Lan11g0505 376 SUPERFAMILY RING/U-box 233 294 - -
Lan11g0505 376 MobiDBLite consensus disorder prediction 122 188 - -
Lan11g0505 376 ProSiteProfiles Zinc finger RING-type profile. 248 289 IPR001841 -
Lan11g0505 376 MobiDBLite consensus disorder prediction 143 175 - -
Lan11g0505 376 MobiDBLite consensus disorder prediction 328 376 - -
Lan11g0505 376 MobiDBLite consensus disorder prediction 92 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0505 Lan-Chr11 3901184 3902314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0505 240 292 C3H Transcription Factor Family AT1G14200 35.849 2.10e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0505 K11982 - lang:109359646 598.586