Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0490 ATGGGCATATATGAGCCATTTGATCAAGTTAGCATGTGGGGAGAGAGCTTCAAAGTTGATAGCAGCTTGAATTCAATTGCTTCTCCAATGTTAATGGTGAACACTAGCATGGAGAACAAATCTGAATGTGTTCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGAAACTACTAACAAAGCTGTTAGTAAGATGCTAAGACGTCTAGCTCAAAATCGTGAGGCTGCTCGGAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTTATGCAATTGGAGCTGGAGATTGAGAAAGAAAAAAAACAGGGTATGTACAAAGGCAGTGCATTATATGCCAGTTATATGGGATCATATGGAGCAATAAACTCAGGGATGTCAACCTTTGAAATTCAATATGGACATTGGGTGGAAGAGCAACTTAGACAGAATGAAGAACTCAGAAATGCATTGCAAACTCACGCATCGGATGTACAACTTCATCTACTTGTTGAGCATAACTTGAACCACTACTCAAATCTCTTCAGGATGAAAGCTGATGCTGCAAAGACTGATATCTTTTATTTAATCTCTGGTGTGTGGAAGTCCCCCGTAGAACGCCTTTTTCTTTGGATCGGAGGATCCCGCCCATCACAGCTTCTGAATATTATTGTGCCACAACTTGAGCCTTTAACGGATCAGCAAATTGGTAGTATTAACAACCTCCGTTTATCGTCTCAGCAAGCTGAAGAAGTTCTTTCATTAGGTTTGGATAAACTCCAGCAGAGTTTGGTCCACAACATAGCGGCCGATCCGTTGGTTGTAGGAAATTATGAGTATGAGATGGTTGCAGCCATGGACAAAATTGAAGCACTAGAAGGTTTTGTAAGCCAGGCAGATAACCTTAGGCAAAAAACTCTGCTGCACTTGTCTAGCATCCTTACTACTGGCCAAGCTGCTCAAGGGTTGTTAGCTATGGCAGACTACTTTCACCGTCTTCGCACTCTTAGCGCTTTAAGGACTGCTCCTCCATGTGGCCCTGCCTAG 1050 0.4276 MGIYEPFDQVSMWGESFKVDSSLNSIASPMLMVNTSMENKSECVPHESREPSGDDQETTNKAVSKMLRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKEKKQGMYKGSALYASYMGSYGAINSGMSTFEIQYGHWVEEQLRQNEELRNALQTHASDVQLHLLVEHNLNHYSNLFRMKADAAKTDIFYLISGVWKSPVERLFLWIGGSRPSQLLNIIVPQLEPLTDQQIGSINNLRLSSQQAEEVLSLGLDKLQQSLVHNIAADPLVVGNYEYEMVAAMDKIEALEGFVSQADNLRQKTLLHLSSILTTGQAAQGLLAMADYFHRLRTLSALRTAPPCGPA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0490 349 ProSiteProfiles DOG1 domain profile. 134 344 IPR025422 GO:0006351|GO:0043565
Lan11g0490 349 PANTHER TRANSCRIPTION FACTOR TGA9 1 343 - -
Lan11g0490 349 Coils Coil 84 111 - -
Lan11g0490 349 SUPERFAMILY Leucine zipper domain 65 100 IPR046347 GO:0003700|GO:0006355
Lan11g0490 349 Pfam bZIP transcription factor 65 96 IPR004827 GO:0003700|GO:0006355
Lan11g0490 349 Pfam Seed dormancy control 153 226 IPR025422 GO:0006351|GO:0043565
Lan11g0490 349 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 343 - -
Lan11g0490 349 MobiDBLite consensus disorder prediction 38 59 - -
Lan11g0490 349 Gene3D - 64 114 - -
Lan11g0490 349 SMART brlzneu 61 125 IPR004827 GO:0003700|GO:0006355
Lan11g0490 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 68 83 IPR004827 GO:0003700|GO:0006355
Lan11g0490 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 63 108 IPR004827 GO:0003700|GO:0006355
Lan11g0490 349 Coils Coil 145 165 - -
Lan11g0490 349 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0490 Lan-Chr11 3765739 3768975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0490 1 349 Calmodulin-binding Proteins AT1G77920 52.617 5.14e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan11g0490 DOG1 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0490 K14431 - gmx:100775882 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0490 11 3765739 3768975 Lan15g0830 15 17465302 17468669 PCT
Lan11g0490 11 3765739 3768975 Lan3g1579 3 27417423 27421300 PCT
Lan15g0830 15 17465302 17468669 Lan11g0490 11 3765739 3768975 PCT
Lan3g1579 3 27417423 27421300 Lan11g0490 11 3765739 3768975 PCT