LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan11g0483	ATGGGTCGTGTTAAACTTGAGATAAAGAGGATAGAGAATACCACCAATCGACAAGTTACATTCTCAAAGCGTAGAAACGGTCTCATCAAGAAAGCTTATGAGTTATCAATTCTATGTGACATTGATATTGCACTTATAATGTTTTCTCCATCAGGACGTCTTAGCCATTTTTCTGGCAGAAGAAGCGCTGCAAGTTTTCCTGAGGTACCTTATCGCAGGGGTATTCAAAACAAAGAGTATTTGCTTAGGACCCTTCAACAGTTGAGGAGTGAAAATGACATAGCTCTTCAGCTGGCCAATCCCGGAGACATTAACTCCGAAATTGAGGAACTCCAACAACAAGTTAGTAGGTTACAGCAACAACTTCAATTGGCGGAGGAGCAAATAAGGATATATGAACCTGACTCATTAAAGATGACATCTATGGCTGAGCTTGAAGCAAGTGAAAAGCACCTTGTAGATACCTTGACACATGTCATTCAGAGAAAGGACTATCTGTTGAACAATCATTTATCTTCATATGATCATCAATCTGGTATTCAGGAGATGCCAACCTCTTTTGATAATGTAGGTTGGTTGCATGATGGTAATCAGAACCATACTCACATGTTTGATGCATCAGCTCCTCTAGATCCACTCAGGGATTTGTCCTCTACCGTGTATGGTTCATTTTCACAAGGAGCGAGTTCAAATGCTGATCCACGAGGCATGGCAGAGTACCAGGTCCCAAATACAAGTGATGGAAACCTTACAACATGGTCTCAAGGATTCACAATGTATCCTAATATTCAGCATATGGTGGGACATGACATGCAAGATATGTTGCCACATGGTCAAGTGAACATTCAAAACACCAACTCACACGTGGAACCACCTAAGAACGATTCTGCAGAATATGACTGCAAATCTCAACATCAGCTTAATGCTCAATCACACATGCTAAATTGA	948	0.4082	MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRRSAASFPEVPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQQVSRLQQQLQLAEEQIRIYEPDSLKMTSMAELEASEKHLVDTLTHVIQRKDYLLNNHLSSYDHQSGIQEMPTSFDNVGWLHDGNQNHTHMFDASAPLDPLRDLSSTVYGSFSQGASSNADPRGMAEYQVPNTSDGNLTTWSQGFTMYPNIQHMVGHDMQDMLPHGQVNIQNTNSHVEPPKNDSAEYDCKSQHQLNAQSHMLN*	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan11g0483	315	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	260	-	-
	Lan11g0483	315	MobiDBLite	consensus disorder prediction	282	315	-	-
	Lan11g0483	315	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Lan11g0483	315	SUPERFAMILY	SRF-like	2	61	IPR036879	GO:0003677\|GO:0046983
	Lan11g0483	315	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL104	1	260	-	-
	Lan11g0483	315	Gene3D	-	13	81	IPR036879	GO:0003677\|GO:0046983
	Lan11g0483	315	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lan11g0483	315	Coils	Coil	108	128	-	-
	Lan11g0483	315	CDD	MADS_MEF2_like	2	58	IPR033896	GO:0000977\|GO:0045944
	Lan11g0483	315	MobiDBLite	consensus disorder prediction	301	315	-	-
	Lan11g0483	315	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lan11g0483	315	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lan11g0483	315	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lan11g0483	315	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lan11g0483	315	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan11g0483	Lan-Chr11	3700763	3704814	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan11g0483	1	282	Type I MADS-box Gene Family	AT1G22130	53.722	3.00e-101	299

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan11g0483		SRF-TF	1e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan11g0483	-		-	pvu:PHAVU_008G170400g	457.218