Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0480 ATGGGTCATCAAATTGATGAAAATCTTGAAACAAAAGAGATGGGTGAGAGAAGTTTGTCAAATTCACGTAGTCAGGTACCATATCTTCACAAAGTGGGAGTTCCTCCAAGACAAAACCTCTTCAAGGAATTCCAAGCCACAGTGAAAGAAACATTCTTCTCCGACGACCCTCTACGCTCCTTCAAGGATCAAACTAAATCTCGGAAATTCATCTTAGGCATTGAAGCCATATTTCCCATACTCAGTTGGGGGAGAAATTATACTTTCAAAAAATTTAGAGGAGACCTTATAGCTGGTCTTACTATTGCAAGTCTCTGCATTCCTCAGGACATTGGATATGCAAAGCTTGCAAATTTGGATCCGCAGTATGGACTGTACTCTAGCTTTGTTCCACCACTGATTTACGCTGTCATGGGTAGTTCTCGAGATATTGCAATTGGACCCGTGGCAGTGGTTTCTCTCTTGTTGGGGACTTTACTTCAGAATGAGATTGATCCTGTCGCAAATCCAACAGATTATCGGCGACTTGCTTTCACTGCGACATTTTTCGCTGGGATTACTCAAGCAATTCTTGGAGTTTTTAGGTTAGGATTTTTGATTGACTTCCTATCCCATGCTGCAATTGTTGGTTTTATGGGGGGAGCTGCTATCACAATTGCACTTCAACAGCTTAAGGGATTTCTTGGGATTGTAAAGTTCACAAAGAAAAGTGACATTATCTCTGTGATGCAATCAGTGTTCTCATCAGCCCATCATGGATGGAACTGGCAAACTATAGTAATTGGAGCTAGCTTTCTAACTTTTCTTCTGTTTGCCAAACATATTGGCAAGAACAGGAAATTGTTCTGGGTGCCAGCAATCGCCCCATTGATATCAGTTATACTCGCCACTTTTTTTGTATACATAACCCGTGCAGACAAGGCAGGTGTTGCAATTGTAAAACACATAGATAAAGGAATTAATCCTTCTTCTGTGAAGGAAATTTATTGGAGTGGTGATTACCTCGGCAAAGGTTTTAGAATTGGCATTGTGGCTGGAATGATAGCATTGACTGAAGCCATAGCGATTGGAAGAACATTTGCTTCTAAGAAGGACTATCAGATCGATGGAAACAAAGAAATGGTGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACTGGTTCATTCTCTCGGTCTGCAGTAAATTACATGGCTGGCTGTGAAACTGCAGTCTCCAATATTGTCATGTCCATCGTTGTATTTTTAACCCTTCTATTCATCACCCCTCTTTTCCAGTACACTCCAAATGCTATTCTTTCTGCTATCATCATATCTGCTGTCATCAACCTTGTGGACTATCAGGCCGCAATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGCGTTGTTTTTGGCTCGGTTGAGATAGGACTTTTAATTGCGGTGTCTATATCCTTTGCAAAGATCCTATTGCAAGTCACAAGGCCCCGAACTGCTATTCTCGGAAAGATTCCTAGAACAACTGTGTATAGAAACATTCAACAGTATCCTGAAGCCACTAAGGTTCCTGGTGTAGTGATTGTAAGAGTTGATTCTGCAATATACTTTTCCAACTCCAATTATGTTAAAGAAAGGATATTAAGATGGCTGATGGATGAGGAAGAACAAATAAAAGGAGATTATCAAACAAAAATACAATTTTTGATAGTTGAAATGTCACCCGTTACAGACATCGACACCAGTGGCATCCATGCCCTTGAAGAATTATATAAAAGTCTCCAGAAGCGAGAAATTCAGCTTGTTCTGGCAAATCCTGGTTCGTTAGTGATTGACAAGCTCCACACATCAAACTTTGCTGATTTGCTTGGTGAGAACAAGATCTTCCTCACTGTTGCTGAGGCTGTTGCATATTGTTATCCAAAGCTGGCTGAAGACCCATGA 1965 0.4051 MGHQIDENLETKEMGERSLSNSRSQVPYLHKVGVPPRQNLFKEFQATVKETFFSDDPLRSFKDQTKSRKFILGIEAIFPILSWGRNYTFKKFRGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQNEIDPVANPTDYRRLAFTATFFAGITQAILGVFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIVKFTKKSDIISVMQSVFSSAHHGWNWQTIVIGASFLTFLLFAKHIGKNRKLFWVPAIAPLISVILATFFVYITRADKAGVAIVKHIDKGINPSSVKEIYWSGDYLGKGFRIGIVAGMIALTEAIAIGRTFASKKDYQIDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNYMAGCETAVSNIVMSIVVFLTLLFITPLFQYTPNAILSAIIISAVINLVDYQAAILIWKIDKFDFVACMGAFFGVVFGSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATKVPGVVIVRVDSAIYFSNSNYVKERILRWLMDEEEQIKGDYQTKIQFLIVEMSPVTDIDTSGIHALEELYKSLQKREIQLVLANPGSLVIDKLHTSNFADLLGENKIFLTVAEAVAYCYPKLAEDP* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0480 654 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Lan11g0480 654 Gene3D STAS domain 503 649 IPR036513 -
Lan11g0480 654 ProSiteProfiles STAS domain profile. 523 646 IPR002645 -
Lan11g0480 654 SUPERFAMILY SpoIIaa-like 525 647 IPR036513 -
Lan11g0480 654 MobiDBLite consensus disorder prediction 1 17 - -
Lan11g0480 654 Pfam STAS domain 524 642 IPR002645 -
Lan11g0480 654 TIGRFAM sulP: sulfate permease 79 642 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan11g0480 654 MobiDBLite consensus disorder prediction 1 23 - -
Lan11g0480 654 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 13 654 - -
Lan11g0480 654 CDD STAS_SulP_like_sulfate_transporter 524 639 - -
Lan11g0480 654 PANTHER SULFATE TRANSPORTER 13 654 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan11g0480 654 Pfam Sulfate permease family 92 471 IPR011547 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0480 Lan-Chr11 3648727 3655153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0480 2 653 Inorganic Solute Cotransporters AT1G22150 77.489 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0480 K17470 - gmx:100797668 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0914 2 19762554 19767292 Lan11g0480 11 3648727 3655153 LSH
Lan11g0480 11 3648727 3655153 Lan9g1108 9 18462171 18465762 LSH
Lan11g0480 11 3648727 3655153 Lan15g0835 15 17560244 17565722 PCT
Lan15g0835 15 17560244 17565722 Lan11g0480 11 3648727 3655153 PCT