Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0474 ATGGCAGCTAAAATGGATTTCTTAAACAGCAGCACACAACTTGAATCAGATCCCTTCAGAGGTGAGTTAATGGAAGTTCTTGCACCTTTTATGAAAAGTTCTTCCACAACACCAACTCCATCTCTACCCTCACCCCCTTCTTCAATTTCATACCTACCTTCTACTTCTTACTCTTCTACCCCTTCCCCTACCTACTTCAACTCCTCTTCCTCACTCCCTATCCAGCCCAATTTCTACACAGAAAGTTGCCCAACAATGATGACCCATTTATTTGACACTGGATCATCAAACAGCCAAAATTTCATAGGCTTTGAGCAACCAACTTCTGTGCTTGGGCTGAACAACCTAACTACATCTCAAATTAACCAGATCCAAGCCCAGATAGTGTTTCAGGCCCAACAGAACAACAACAACAACATCATCAACAGCAATAGCAACACACTCAGCTTCCTGTGTCCCAAACCTGTCCCAATGAAGCAAGTGGGCTTGCCTCCAAAGCCCACCAAGCTATACAGAGGGGTAAGGCAAAGACATTGGGGGAAATGGGTGGCTGAGATAAGACTCCCAAAGAACAGGTCAAGGCTTTGGCTTGGTACCTTTGATACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCAGCATACAAGCTCAGAGGTGACTCTGCAAGGCTTAACTTCCCTAACCTGAAGCACCAAGGATCATGTGTTGGTGGTGCTTTTGGAGAGTATAAGCCTTTGCATTCTTCTGTATATGCAAAGCTTGATGCTATCTGTGATGATTTGCAGAAACAAGGAAAGCCAGAGAAGCCTGTGAGGTCTTCTAAGAAACCAAAAGTGAGTTCAAAGGAAGAGGCTCAGCCACAGTTGGAGAACAACAACAACAACAACAGCAACAACAACTGCAAGGTTGAAACCTTAGTGTCTCCTGTTGTGACAGATAGTGAAGGCTCTTCAGGGTCTTCTCCTCTTTCAGATTTTACATTTGATGAATTCACTGAGCCACAGTGGGAAACTCCTTCAGAACATTTTAATCTGATGAAGTTCCCTTCTTATGAGATTGACTGGGATTCTCTCTGA 1077 0.4401 MAAKMDFLNSSTQLESDPFRGELMEVLAPFMKSSSTTPTPSLPSPPSSISYLPSTSYSSTPSPTYFNSSSSLPIQPNFYTESCPTMMTHLFDTGSSNSQNFIGFEQPTSVLGLNNLTTSQINQIQAQIVFQAQQNNNNNIINSNSNTLSFLCPKPVPMKQVGLPPKPTKLYRGVRQRHWGKWVAEIRLPKNRSRLWLGTFDTAEEAALAYDKAAYKLRGDSARLNFPNLKHQGSCVGGAFGEYKPLHSSVYAKLDAICDDLQKQGKPEKPVRSSKKPKVSSKEEAQPQLENNNNNNSNNNCKVETLVSPVVTDSEGSSGSSPLSDFTFDEFTEPQWETPSEHFNLMKFPSYEIDWDSL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0474 358 SMART rav1_2 170 233 IPR001471 GO:0003700|GO:0006355
Lan11g0474 358 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700|GO:0006355
Lan11g0474 358 CDD AP2 169 229 IPR001471 GO:0003700|GO:0006355
Lan11g0474 358 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Lan11g0474 358 MobiDBLite consensus disorder prediction 263 331 - -
Lan11g0474 358 MobiDBLite consensus disorder prediction 284 331 - -
Lan11g0474 358 MobiDBLite consensus disorder prediction 32 54 - -
Lan11g0474 358 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700|GO:0006355
Lan11g0474 358 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Lan11g0474 358 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Lan11g0474 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 357 - -
Lan11g0474 358 MobiDBLite consensus disorder prediction 263 283 - -
Lan11g0474 358 SUPERFAMILY DNA-binding domain 170 227 IPR016177 GO:0003677
Lan11g0474 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0474 Lan-Chr11 3611704 3613568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0474 1 358 AP2-EREBP Transcription Factor Family AT1G78080 48.787 2.02e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan11g0474 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0474 K09286 - gmx:732559 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0918 2 19826527 19828188 Lan11g0474 11 3611704 3613568 LSH
Lan11g0474 11 3611704 3613568 Lan9g1112 9 18477692 18479258 LSH
Lan11g0474 11 3611704 3613568 Lan15g0843 15 17643013 17653566 PCT
Lan11g0474 11 3611704 3613568 Lan14g0645 14 13384605 13386440 PCT
Lan15g0843 15 17643013 17653566 Lan11g0474 11 3611704 3613568 PCT
Lan14g0645 14 13384605 13386440 Lan11g0474 11 3611704 3613568 PCT